NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE180587 Query DataSets for GSE180587
Status Public on Nov 23, 2022
Title RNA profiling of Col-0 and vil1-1 1-day-old seedlings in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary 1-day-old seedlings of Col-0 and vil1-1 were performed RNA-Seq to identify differentially expressed genes caused by VIL1 mutation in Arabidopsis
 
Overall design 6 samples from Col-0, vil1-1 1-day-old seedlings grow under long day condition with three biological replicates
 
Contributor(s) Zong W, Sung S
Citation(s) 35403701
Submission date Jul 21, 2021
Last update date Nov 24, 2022
Contact name Wei Zong
E-mail(s) weiz@austin.utexas.edu
Organization name University of Texas at Austin
Department Molecular Biosciences
Street address NMS 5.268, Stop A5000
City Austin
State/province Texas
ZIP/Postal code 78712
Country USA
 
Platforms (1)
GPL26208 Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (6)
GSM5465321 Col-0 R1
GSM5465322 Col-0 R2
GSM5465323 Col-0 R3
Relations
BioProject PRJNA748742
SRA SRP329318

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180587_DEGs_between_vil1-1_and_Col-0.txt.gz 560.9 Kb (ftp)(http) TXT
GSE180587_RAW.tar 540.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap