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Series GSE181385 Query DataSets for GSE181385
Status Public on Oct 05, 2021
Title Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq analysis of the effect of CRISPR/Cas9-induced CTCF binding sites deletions on gene expression. We studied E12.5 distal or proximal forelimbs of wildtype and mutant alleles.
 
Overall design RNA-seq analysis of the effect of CRISPR/Cas9-induced CTCF binding sites deletions on gene expression. We studied E12.5 distal or proximal forelimbs of wildtype and mutant alleles.
 
Contributor(s) Amândio AR, Beccari L, Lopez-Delisle L, Mascrez B, Zakany J, Gitto S, Duboule D
Citation(s) 34711654
Submission date Aug 03, 2021
Last update date Nov 18, 2021
Contact name Lucille Lopez-Delisle
E-mail(s) lucille.delisle@epfl.ch
Organization name EPFL
Street address Station 19
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (36)
GSM5501429 E12.5 DFL WT RNAseq rep1
GSM5501430 E12.5 DFL WT RNAseq rep2
GSM5501431 E12.5 DFL WT RNAseq rep3
This SubSeries is part of SuperSeries:
GSE181387 Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster
Relations
BioProject PRJNA751984
SRA SRP331019

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181385_AllCufflinks_Simplified.txt.gz 4.1 Mb (ftp)(http) TXT
GSE181385_AllHTSeqCounts_subset.txt.gz 1.3 Mb (ftp)(http) TXT
GSE181385_RAW.tar 2.6 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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