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Series GSE183060 Query DataSets for GSE183060
Status Public on Oct 27, 2021
Title Global analysis of the zinc homeostasis network in Pseudomonas aeruginosa (DOI: 10.3389/fmicb.2021.739988)
Organism Pseudomonas aeruginosa PAO1
Experiment type Other
Summary In this study we followed up the dynamics of all genes involved in zinc homeostasis in Pseudomonas aeruginosa from starvation to excess, as it happens during infection. The results showed a hierarchical induction of the export systems and a global repression of import mechanisms
 
Overall design In this study, three cultures of wild type Pseudomonas aeruginosa, followed up for 60 min after zinc induction, were used to acquire mRNA counts of 25 target genes and 4 reference genes.
 
Contributor(s) Perron K, Ducret V
Citation(s) 34690984
Submission date Aug 30, 2021
Last update date Oct 29, 2021
Contact name Natacha Civic
E-mail(s) natacha.civic@unige.ch
Organization name University of Geneva
Department iGE3 Genomics Platform
Lab University of Geneva
Street address Rue Michel-Servet 1
City Geneva
ZIP/Postal code 1211-4
Country Switzerland
 
Platforms (1)
GPL30568 nCounter XT_GX assays
Samples (24)
GSM5550271 SAMPLE 1: wt1 t0
GSM5550272 SAMPLE 2: wt1 0,5min
GSM5550273 SAMPLE 3: wt1 1min
Relations
BioProject PRJNA758984

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183060_RAW.tar 40.0 Kb (http)(custom) TAR (of RCC)
GSE183060_normalized_barcode_counts.xlsx 17.8 Kb (ftp)(http) XLSX
Processed data included within Sample table
Processed data are available on Series record

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