|
| Status |
Public on Sep 03, 2021 |
| Title |
Functional genomic analysis of the SPL9 gene in Arabidopsis thaliana under low phosphate conditions |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Inorganic phosphate (Pi) is an essential nutrient, which is often served as a limiting factor in plant growth. It has been reported that SPL family members, such as SPL3, regulate Pi deficiency responses by controlling the expression of Pi deficiency responsive genes. To elucidate whether SPL9 respond to low phosphorus stress, we investigated the phenotypes and conduct RNA sequencing analysis in transgenic Arabidopsis thaliana with overexpressing SPL9 (R9) under conditions of both normal and low Pi availability. Compared with wild-type plants, R9 showed decreased anthocyanin accumulation and increased Pi contents in shoots under Pi deficiency. Through RNA-seq analysis compared with wild-type plants, we detected 217 genes significantly differentially expressed in conditions of Pi sufficiency, and 121 genes differentially expressed in conditions of Pi deficiency in R9 plants. Under Pi deficiency, these genes included multiple protein kinases, jasmonic acid response genes and genes related to salt stress responses. Genes associated with hydrolase and transferase activity were also differentially regulated by Pi deficiency, such as cytochrome P450 monooxygenases. Of particular note, the transcription factor AP2-EREBP and members of the bHLH family were among the most significantly differentially regulated genes identified under both Pi sufficient and Pi deficient conditions.
|
| |
|
| Overall design |
RNA sequence profiles of 21-day old of Pi-sufficient and Pi-deficient treatment of wild type (WT) and R9 seedlings were generated using Illumina NovaSeq 6000 platform in triple.
|
| |
|
| Contributor(s) |
Dong H, Lei K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Sep 02, 2021 |
| Last update date |
Sep 03, 2021 |
| Contact name |
Lisa Lei |
| E-mail(s) |
leikaijian@126.com
|
| Organization name |
Henan University
|
| Street address |
Jinming Xi Street
|
| City |
Kaifeng |
| ZIP/Postal code |
475000 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA759912 |
| SRA |
SRP335430 |
Less...
More...