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Series GSE183418 Query DataSets for GSE183418
Status Public on Apr 30, 2023
Title Genome-wide binding of FOXD3 in mouse ESCs
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed streptavidin pulldown sequencing of endogenously and exogenously Avi-tagged FOXD3 to determine genome-wide binding pattern of this transcription factor in asynchronous or cell cycle synchronized naive mouse ESCs.
Overall design Endogenously Avi-tagged FOXD3 was compared to non-BirA expressing cells and exogeneously Avi-tagged FOXD3 was compared to non-induced cells.
Contributor(s) Gökbuget D, Blelloch R
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Submission date Sep 03, 2021
Last update date May 02, 2023
Contact name Robert Blelloch
Organization name UCSF
Department Urology
Street address 35 Medical Center Way
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (18)
GSM5557114 FOXD3-exo-2i-rep1
GSM5557115 FOXD3-exo-2i-rep2
GSM5557116 FOXD3-exo-2i-rep3
This SubSeries is part of SuperSeries:
GSE183420 Transcriptional repressor FOXD3 safeguards genome integrity in embryonic stem cells
BioProject PRJNA760537
SRA SRP335619

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Supplementary file Size Download File type/resource 614.6 Mb (ftp)(http) BW 727.0 Mb (ftp)(http) BW 497.0 Mb (ftp)(http) BW
GSE183418_RAW.tar 2.0 Gb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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