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Series GSE183418 Query DataSets for GSE183418
Status Public on Apr 30, 2023
Title Genome-wide binding of FOXD3 in mouse ESCs
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed streptavidin pulldown sequencing of endogenously and exogenously Avi-tagged FOXD3 to determine genome-wide binding pattern of this transcription factor in asynchronous or cell cycle synchronized naive mouse ESCs.
 
Overall design Endogenously Avi-tagged FOXD3 was compared to non-BirA expressing cells and exogeneously Avi-tagged FOXD3 was compared to non-induced cells.
 
Contributor(s) Gökbuget D, Blelloch R
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Submission date Sep 03, 2021
Last update date May 02, 2023
Contact name Robert Blelloch
Organization name UCSF
Department Urology
Street address 35 Medical Center Way
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (18)
GSM5557114 FOXD3-exo-2i-rep1
GSM5557115 FOXD3-exo-2i-rep2
GSM5557116 FOXD3-exo-2i-rep3
This SubSeries is part of SuperSeries:
GSE183420 Transcriptional repressor FOXD3 safeguards genome integrity in embryonic stem cells
Relations
BioProject PRJNA760537
SRA SRP335619

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183418_DG104106.sorted.dedup.CPM.bw 614.6 Mb (ftp)(http) BW
GSE183418_DG105107.sorted.dedup.CPM.bw 727.0 Mb (ftp)(http) BW
GSE183418_DG142022.sorted.dedup.merged.CPM.bw 497.0 Mb (ftp)(http) BW
GSE183418_RAW.tar 2.0 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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