|
| Status |
Public on Jan 01, 2010 |
| Title |
Aerobic cultivation vs Respiratory conditions |
| Platform organism |
Lactiplantibacillus plantarum WCFS1 |
| Sample organism |
Lactiplantibacillus plantarum |
| Experiment type |
Expression profiling by array
|
| Summary |
The effect of respiration (aerobic cultivation in the presence of heme and vitamin K2) was compared with unsupplemented aerobic cultivation with Lactobacillus plantarum.
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| |
|
| Overall design |
Two-condition experiment, aerobic vs respiring cells. Biological replicates: 3 aerobic cultures, 3 respiring cultures, independently grown and harvested. One replicate per array. Respiring cultures are called reactor 1-3; Aerobic cultures are called reactor 4-6
In the subsequent analysis data from reactor 4 were not used. There was likely a mistake made during quenching. This was concluded as new labeling/hybridisation gave same (bad) results (128a); slide 128b was dye-swap.
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| |
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| Contributor(s) |
Brooijmans RJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 06, 2009 |
| Last update date |
Mar 21, 2012 |
| Contact name |
Michiel Wels |
| E-mail(s) |
michiel.wels@nizo.com
|
| Organization name |
NIZO food research
|
| Street address |
Kernhemseweg 2
|
| City |
Ede |
| ZIP/Postal code |
6718 ZB |
| Country |
Netherlands |
| |
|
| Platforms (1) |
| GPL9359 |
WCFS Lactobacillus plantarum 11K 60-mer array, Version 2 |
|
| Samples (10)
|
| GSM459362 |
reactor 1 (resp) vs reactor 2 (resp)_2514964100131a |
| GSM459363 |
reactor 2 (resp) vs reactor 5 (aer)_2514964100131b |
| GSM459364 |
reactor 5 (aer) vs reactor 4 (aer)_2514964100134a |
| GSM459365 |
reactor 4 (aer) vs reactor 1 (resp)_2514964100134b |
| GSM459366 |
reactor 2 (resp) vs reactor 3 (resp)_2514964100135a |
| GSM459367 |
reactor 3 (resp) vs reactor 6 (aer)_2514964100135b |
| GSM459368 |
reactor 6 (aer) vs reactor 1 (resp)_2514964100136a |
| GSM459369 |
reactor 6 (aer) vs reactor 5 (aer)_2514964100136b |
| GSM459370 |
reactor 5 (aer) vs reactor 4 (aer)_2514964100128a |
| GSM459371 |
reactor 5 (aer) vs reactor 6 (aer)_2514964100128b |
|
| Relations |
| BioProject |
PRJNA118231 |
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