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Series GSE186546 Query DataSets for GSE186546
Status Public on Dec 31, 2022
Title The L1p/L10e-type protein DIP1 recruits the long noncoding RNA DANA1 and the PEAT complex to trigger histone deacetylation of drought responsive genes in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary DANA1 is a positive regulator of drought response and that DANA1 works jointly with the novel chromatin-related factor DIP1 to modulate the epigenetic reprogramming of the plant transcriptome during the response to drought.
 
Overall design Total RNA was isolated from 10-day old wild type Col-0 and dana1 mutant, in triplicate, using Illumina NovaSeq 6000.
 
Contributor(s) Wang D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 25, 2021
Last update date Dec 31, 2022
Contact name Dong Wang
E-mail(s) dongwang@ncu.edu.cn
Phone (86) 15921240757
Organization name Nanchang University
Street address Hong Gu Tan New Road, No. 999
City Nanchang
State/province JiangXi
ZIP/Postal code 330031
Country China
 
Platforms (1)
GPL26208 Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (6)
GSM5655501 Col_1
GSM5655502 Col_2
GSM5655503 Col_3
Relations
BioProject PRJNA774347
SRA SRP343055

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186546_reference_gene_raw_count.txt.gz 318.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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