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| Status |
Public on Nov 08, 2021 |
| Title |
Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq |
| Organisms |
Strongylocentrotus purpuratus; Branchiostoma lanceolatum; Danio rerio |
| Experiment type |
Other
|
| Summary |
Using ACE-seq we investigated single-base resolution hydroxymethylomes of sea urchin, lancelet and zebrafish during development.
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| |
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| Overall design |
ACE-seq was perfomred on (i) 24 hpf, 48 hpf, 72 hpf embryos and adult tissue (tube feet) of purple sea urchin in biological replicates; (ii) 36 hpf, larvae (60-70 hpf), juvenile (3-4mo) and adult tissue (liver) of european lancelet in biological replicates (larvae and juvenile stages); (iii) zebrafish 24 hpf embryo.
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| |
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| Contributor(s) |
Skvortsova K |
| Citation(s) |
36459547 |
| |
| Submission date |
Nov 06, 2021 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Ksenia Skvortsova |
| E-mail(s) |
k.skvortsova@garvan.org.au
|
| Phone |
478135210
|
| Organization name |
Garvan Institute
|
| Department |
Genomics and Epigenetics
|
| Lab |
Developmental Epigenomics
|
| Street address |
384 Victoria St, Darlinghurst
|
| City |
Sydney |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
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| Platforms (5)
|
| GPL23085 |
HiSeq X Ten (Danio rerio) |
| GPL25186 |
HiSeq X Ten (Branchiostoma lanceolatum) |
| GPL27879 |
Illumina NovaSeq 6000 (Branchiostoma lanceolatum) |
| GPL29871 |
Illumina NovaSeq 6000 (Strongylocentrotus purpuratus) |
| GPL30935 |
HiSeq X Ten (Strongylocentrotus purpuratus) |
|
| Samples (15)
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| This SubSeries is part of SuperSeries: |
| GSE188334 |
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues |
|
| Relations |
| BioProject |
PRJNA778393 |
| SRA |
SRP344882 |
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