|
| Status |
Public on Nov 10, 2009 |
| Title |
Translation Profiling +/- miR-124 |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
Ribosome Occupancy Experiments: for these experiments Channel 1 is amplified RNA (aRNA) from mRNA unbound to any ribosomes. Channel 2 is aRNA from mRNA associated with ribosomes.
Ribosome Density Experiments: for these experiments Channel 1 is amplified RNA (aRNA) from mRNA present in the light fractions of the polysome. Channel 2 is aRNA from mRNA associated with ribosomes deep in the polysome.
|
| |
|
| Overall design |
Experiments are biological replicates of ribosome occupancy and density 12 hours post mock transfection or miR-124 transfection.
|
| |
|
| Contributor(s) |
Hogan D |
| Citation(s) |
19901979 |
| Submission date |
Oct 30, 2009 |
| Last update date |
Mar 21, 2012 |
| Contact name |
Patrick O Brown |
| E-mail(s) |
pbrown@cmgm.stanford.edu
|
| Organization name |
Stanford university school of medicine
|
| Department |
Department of biochemistry
|
| Street address |
Beckman Center b439
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9497 |
SMD Print_1529 Homo sapiens |
|
| Samples (10)
|
| GSM466862 |
Ribosome Occupancy experiment: miR-124 12 hrs. (5-20-08) |
| GSM466863 |
Ribosome density experiment: miR-124 12 hrs. (5-20-08) |
| GSM466864 |
Ribosome Occupancy experiment: mock 12 hrs. (5-12-08) |
| GSM466865 |
Ribosome density experiment: mock 12 hrs Density #2 (5-14-08) |
| GSM466866 |
Ribosome density experiment: mock 12 hrs. (5-12-08) |
| GSM466867 |
Ribosome Occupancy experiment: mir-124 12 hrs. #2 (5-14-08) |
| GSM466868 |
Ribosome Occupancy experiment: mock 12 hrs. (5-14-08) |
| GSM466869 |
Ribosome density experiment: mock 12 hrs. (5-20-08) |
| GSM466870 |
Ribosome Occupancy experiment: mock 12 hrs. (5-20-08) |
| GSM466871 |
Ribosome density experiment: miR-124 12 hrs. (5-14-08) |
|
| This SubSeries is part of SuperSeries: |
| GSE18889 |
Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA |
|
| Relations |
| BioProject |
PRJNA123847 |
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