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GEO accession:
Series GSE190137
Query DataSets for GSE190137
Status
Public on Dec 03, 2021
Title
Distinguishing between recruitment and spread of silent chromatin structures in Saccharomyces cerevisiae
Organism
Saccharomyces cerevisiae
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35073254
Submission date
Dec 03, 2021
Last update date
Feb 23, 2022
Contact name
Molly Brothers
E-mail(s)
molly_brothers@berkeley.edu
Organization name
University of California, Berkeley
Department
Molecular and Cell Biology
Lab
Rine Lab (440 Barker Hall)
Street address
UC Berkeley 440 Barker Hall
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Platforms (2)
GPL22715
Illumina MiniSeq (Saccharomyces cerevisiae)
GPL25739
MinION (Saccharomyces cerevisiae)
Samples (61)
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More...
GSM5693567
210122_Crabby_Sir3-MEcoGII-3xV5_input
GSM5693568
210122_Crabby_Sir3-MEcoGII-3xV5_ChIP
GSM5693569
200808_Chase_no-EcoGII_m6A_input
GSM5693570
200808_Chase_no-EcoGII_m6A_DIP
GSM5693571
200808_Chase_sir3D-EcoGII_m6A_input
GSM5693572
200808_Chase_sir3D-EcoGII_m6A_DIP
GSM5693573
200808_Chase_SIR3-EcoGII_m6A_input
GSM5693574
200808_Chase_SIR3-EcoGII_m6A_DIP
GSM5693575
210114_Birthday_no-EcoGII_m6A_input
GSM5693576
210114_Birthday_no-EcoGII_m6A_DIP
GSM5693577
210114_Birthday_sir3D-EcoGII_m6A_input
GSM5693578
210114_Birthday_sir3D-EcoGII_m6A_DIP
GSM5693579
210114_Birthday_SIR3-EcoGII_m6A_input
GSM5693580
210114_Birthday_SIR3-EcoGII_m6A_DIP
GSM5693581
210716_Solo_sir3D-EcoGII_m6A_input
GSM5693582
210716_Solo_sir3D-EcoGII_m6A_DIP
GSM5693583
210716_Solo_SIR3-EcoGII_m6A_input
GSM5693584
210716_Solo_SIR3-EcoGII_m6A_DIP
GSM5693585
210716_Solo_sir3-bahD-EcoGII_m6A_input
GSM5693586
210716_Solo_sir3-bahD-EcoGII_m6A_DIP
GSM5693587
210111_Resolution_sir3-8-EcoGII_25C_m6A_input
GSM5693588
210111_Resolution_sir3-8-EcoGII_25C_m6A_DIP
GSM5693589
210111_Resolution_sir3-8-EcoGII_37C_m6A_input
GSM5693590
210111_Resolution_sir3-8-EcoGII_37C_m6A_DIP
GSM5715125
Turkey_sir3D-EcoGII
GSM5715126
Turkey_SIR3-EcoGII
GSM5715127
Gorgonzola_SIR2-EcoGII
GSM5715128
Raja_SIR4-EcoGII
GSM5715129
Fireworks_SIR3-EcoGII
GSM5715130
Fireworks_sir3D-EcoGII
GSM5715131
Fireworks_sir3-bahD-EcoGII
GSM5715132
Doudna_SIR3-EcoGII
GSM5715133
Ashby_SIR3-EcoGII
GSM5715134
Ashby_sir3D-EcoGII
GSM5715135
Ashby_sir3-bahD-EcoGII
GSM5715136
Bonus_empty-vector
GSM5715137
Bonus_SIR3-EcoGII_overexpression
GSM5715138
TakeFive_empty-vector
GSM5715139
TakeFive_SIR3-EcoGII_overexpression
GSM5715140
Ocular_sir3-8-EcoGII_25C
GSM5715141
Ocular_sir3-8-EcoGII_37C
GSM5715142
Amanita_sir3-8-EcoGII_0min
GSM5715143
Amanita_sir3-8-EcoGII_15min
GSM5715144
Amanita_sir3-8-EcoGII_30min
GSM5715145
Amanita_sir3-8-EcoGII_45min
GSM5715146
Amanita_sir3-8-EcoGII_60min
GSM5715147
Amanita_sir3-8-EcoGII_90min
GSM5715148
Russula_sir3-8-EcoGII_0min
GSM5715149
Russula_sir3-8-EcoGII_15min
GSM5715150
Russula_sir3-8-EcoGII_30min
GSM5715151
Russula_sir3-8-EcoGII_45min
GSM5715152
Russula_sir3-8-EcoGII_60min
GSM5715153
Russula_sir3-8-EcoGII_90min
GSM5823537
220115_Sir3-MEcoGII-emptyvector-rep1_input
GSM5823538
220115_Sir3-MEcoGII-emptyvector-rep1_ChIP
GSM5823539
220115_Sir3-MEcoGII-emptyvector-rep2_input
GSM5823540
220115_Sir3-MEcoGII-emptyvector-rep2_ChIP
GSM5823541
220115_Sir3-MEcoGII-overexpression-rep1_input
GSM5823542
220115_Sir3-MEcoGII-overexpression-rep1_ChIP
GSM5823543
220115_Sir3-MEcoGII-overexpression-rep2_input
GSM5823544
220115_Sir3-MEcoGII-overexpression-rep2_ChIP
This SuperSeries is composed of the following SubSeries:
GSE189038
Distinguishing between recruitment and spread of silent chromatin structures in Saccharomyces cerevisiae [I]
GSE190136
Distinguishing between recruitment and spread of silent chromatin structures in Saccharomyces cerevisiae [II]
Relations
BioProject
PRJNA785980
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE190137_RAW.tar
109.7 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH, SQLITE)
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