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| Status |
Public on Feb 18, 2022 |
| Title |
Genome-wide replication fork directionality measured by strand-specific sequencing of Okazaki fragments in chicken lymphoma cells (DT40). |
| Organism |
Gallus gallus |
| Experiment type |
Other
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| Summary |
Genome-wide replication fork directionality measured by strand-specific sequencing of Okazaki fragments in chicken lymphoma cells (DT40).
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| Overall design |
Here we provide strand-specific sequencing of Okazaki fragments (OK-seq) and measurement of DNA replication fork directionarity (RFD) in DT40 cells. RFD reveals the proportion of rightward- and leftward-oriented forks in every genomic locus and allows a quantitative analysis of replication initiation, progression and termination along the genome.
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| Contributor(s) |
Chen C, Petryk N, Hyrien O |
| Citation(s) |
33836085, 35320711 |
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| Submission date |
Feb 15, 2022 |
| Last update date |
May 03, 2022 |
| Contact name |
Chunlong Chen |
| E-mail(s) |
chunlong.chen@curie.fr
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| Organization name |
Institut Curie
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| Department |
UMR3244
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| Street address |
26 rue d’Ulm
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| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
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| Platforms (1) |
| GPL19787 |
Illumina NextSeq 500 (Gallus gallus) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA807272 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE196761_RAW.tar |
8.3 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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