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GEO help: Mouse over screen elements for information. |
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Status |
Public on Feb 13, 2015 |
Title |
Illumina NextSeq 500 (Gallus gallus) |
Technology type |
high-throughput sequencing |
Distribution |
virtual |
Organism |
Gallus gallus |
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Submission date |
Feb 13, 2015 |
Last update date |
Feb 13, 2015 |
Contact name |
GEO |
Country |
USA |
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Samples (5259)
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GSM1611466, GSM1611467, GSM1611468, GSM1611469, GSM1611470, GSM1611471
GSM1611472, GSM1611473, GSM2044764, GSM2044765, GSM2044766, GSM2044767, GSM2044768, GSM2044769, GSM2044770, GSM2044771, GSM2044772, GSM2301938, GSM2301939, GSM2301940, GSM2301941, GSM2301942, GSM2301943, GSM2301944, GSM2301945, GSM2306458, GSM2306459, GSM2306460, GSM2306461, GSM2306462, GSM2306463, GSM2306464, GSM2306465, GSM2306466, GSM2306467, GSM2306468, GSM2306469, GSM2306470, GSM2306471, GSM2306472, GSM2306473, GSM2306474, GSM2306475, GSM2306476, GSM2306477, GSM2306478, GSM2326126, GSM2326127, GSM2326128, GSM2326129, GSM2326130, GSM2326131, GSM2326132, GSM2326133, GSM2326134, GSM2326135, GSM2326136, GSM2326137, GSM2326138, GSM2326139, GSM2326140, GSM2326141, GSM2326142, GSM2326143, GSM2326144, GSM2326145, GSM2693545, GSM2693546, GSM2693547, GSM2693548, GSM2693549, GSM2693550, GSM2693551, GSM2693552, GSM2693553, GSM2702042, GSM2702043, GSM2702044, GSM2702045, GSM2702046, GSM2702047, GSM2702048, GSM2702049, GSM2702050, GSM2702051, GSM2702052, GSM2702053, GSM2702054, GSM2702055, GSM2702056, GSM2702057, GSM2702058, GSM2702059, GSM2702060, GSM2702061, GSM2702062, GSM2702063, GSM2702064, GSM2702065, GSM2702066, GSM2702067, GSM2702068, GSM2702069, GSM2702070, GSM2702071, GSM2702072, GSM2702073, GSM2702074, GSM2702075, GSM2702076, GSM2702077, GSM2702078, GSM2702079, GSM2702080, GSM2714356, GSM2714357, GSM2714358, GSM2714359, GSM2714360, GSM2714361, GSM2714362, GSM2714363, GSM2735363, GSM2735364, GSM2735365, GSM2735366, GSM2735367, GSM2735368, GSM2735369, GSM2735370, GSM2735371, GSM3022164, GSM3022165, GSM3022166, GSM3022167, GSM3022168, GSM3022169, GSM3132749, GSM3132750, GSM3132751, GSM3132752, GSM3132753, GSM3132754, GSM3146628, GSM3146629, GSM3146630, GSM3146631, GSM3146632, GSM3146633, GSM3182408, GSM3182409, GSM3182470, GSM3182471, GSM3375591, GSM3401769, GSM3401770, GSM3401771, GSM3401772, GSM3401773, GSM3401774, GSM3416411, GSM3416412, GSM3416413, GSM3416414, GSM3416415, GSM3416416, GSM3416417, GSM3416418, GSM3416419, GSM3416420, GSM3416421, GSM3416422, GSM3416423, GSM3416424, GSM3416425, GSM3416426, GSM3416427, GSM3416428, GSM3416429, GSM3416430, GSM3416431, GSM3416432, GSM3416433, GSM3416434, GSM3431421, GSM3431422, GSM3431423, GSM3431424, GSM3431425, GSM3431426, GSM3431427, GSM3431428, GSM3431429, GSM3431430, GSM3431431, GSM3431432, GSM3431433, GSM3431434, GSM3431435, GSM3431436, GSM3431437, GSM3431705, GSM3431706, GSM3431707, GSM3431708, GSM3431709, GSM3431710, GSM3507492, GSM3507493, GSM3507494, GSM3507495, GSM3507496, GSM3507497, GSM3559255, GSM3559256, GSM3559257, GSM3564999, GSM3565000, GSM3565001, GSM3565002, GSM3565003, GSM3565004, GSM3565005, GSM3565006, GSM3565007, GSM3565008, GSM3565009, GSM3565010, GSM3580697, GSM3580698, GSM3580699, GSM3580700, GSM3580701, GSM3580702, GSM3580703, GSM3580704, GSM3580705, GSM3580706, GSM3580707, GSM3580708, GSM3580709, GSM3580710, GSM3580711, GSM3580712, GSM3580713, GSM3580714, GSM3580715, GSM3580716, GSM3580717, GSM3580718, GSM3580719, GSM3580720, GSM3580721, GSM3580722, GSM3580723, GSM3580747, GSM3580748, GSM3580749, GSM3580750, GSM3580751, GSM3580752, GSM3580753, GSM3580754, GSM3580755, GSM3580756, GSM3580757, GSM3580758, GSM3580759, GSM3580760, GSM3580761, GSM3580762, GSM3580763, GSM3580764, GSM3580765, GSM3580766, GSM3580767, GSM3580768, GSM3580769, GSM3580770, GSM3580771, GSM3580772, GSM3580773, GSM3580774, GSM3580775, GSM3580776, GSM3580777, GSM3580778, GSM3616162, GSM3616163, GSM3616164, GSM3616165, GSM3616166, GSM3616167, GSM3616168, GSM3616169, GSM3616170, GSM3616171, GSM3616172, GSM3616173, GSM3616174, GSM3616175, GSM3616176, GSM3616177, GSM3616178, GSM3616179, GSM3616180, GSM3672155, GSM3672156, GSM3672159, GSM3672160, GSM3738693, GSM3738695, GSM3741315, GSM3741316, GSM3741317, GSM3741318, GSM3741319, GSM3741320, GSM3741321, GSM3741322, GSM3741323, GSM3741324, GSM3741325, GSM3741326, GSM3741327, GSM3741328, GSM3741329, GSM3741330, GSM3741331, GSM3741332, GSM3741333, GSM3741334, GSM3741335, GSM3741336, GSM3741337, GSM3741338, GSM3741339, GSM3741340, GSM3741341, GSM3741342, GSM3741343, GSM3741344, GSM3741345, GSM3741346, GSM3741347, GSM3741348, GSM3741349, GSM3741350, GSM3741351, GSM3741352, GSM3741353, GSM3741354, GSM3741355, GSM3741356, GSM3741357, GSM3741358, GSM3741359, GSM3741360, GSM3741361, GSM3741362, GSM3741363, GSM3741364, GSM3741365, GSM3741366, GSM3741367, GSM3741368, GSM3741369, GSM3741370, GSM3741371, GSM3741372, GSM3741373, GSM3741374, GSM3741375, GSM3741376, GSM3741377, GSM3741378, GSM3741379, GSM3741380, GSM3741381, GSM3741382, GSM3741383, GSM3741384, GSM3741385, GSM3741386, GSM3741387, GSM3741388, GSM3741389, GSM3741390, GSM3741391, GSM3741392, GSM3741393, GSM3741394, GSM3741395, GSM3741396, GSM3741397, GSM3741398, GSM3741399, GSM3741400, GSM3741401, GSM3741402, GSM3741403, GSM3741404, GSM3741405, GSM3741406, GSM3741407, GSM3741408, GSM3741409, GSM3741410, GSM3741411, GSM3741412, GSM3741413, GSM3741414, GSM3741415, GSM3741416, GSM3741417, GSM3741418, GSM3741419, GSM3741420, GSM3741421, GSM3741422, GSM3741423, GSM3741424, GSM3741425, GSM3741426, GSM3741427, GSM3741428, GSM3741429, GSM3741430, GSM3741431, GSM3741432, GSM3741433, GSM3741434, GSM3741435, GSM3741436, GSM3741437, GSM3741438, GSM3741439, GSM3741440, GSM3741441, GSM3741442, GSM3741443, GSM3741444, GSM3741445, GSM3741446, GSM3741447, GSM3741448, GSM3741449, GSM3741450, GSM3741451, GSM3741452, GSM3741453, GSM3741454, GSM3741455, GSM3741456, GSM3741457, GSM3741458, GSM3741459, GSM3741460, GSM3741461, GSM3741462, GSM3741463, GSM3741464, GSM3741465, GSM3741466, GSM3741467, GSM3741468, GSM3741469, GSM3741470, GSM3741471, GSM3741472, GSM3741473, GSM3741474, GSM3741475, GSM3741476, GSM3741477, GSM3741478, GSM3741479, GSM3741480, GSM3772639, GSM3772640, GSM3772641, GSM3772642, GSM3772643, GSM3772644, GSM3772645, GSM3772646, GSM3772647, GSM3772648, GSM3772649, GSM3772650, GSM3772651, GSM3772652, GSM3772653, GSM3813982, GSM3813983, GSM3814901, GSM3814902, GSM3814903, GSM3814904, GSM3814905... Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
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Series (120)
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GSE65938 |
RNA-seq analysis of the developing chicken retina |
GSE77141 |
Bcl6 is Required for Somatic Hypermutation and Gene Conversion in Chicken DT40 Cells |
GSE86414 |
Histone H3 Lysine 4 trimethylation (H3K4me3) ChIP-Seq to identify actively transcribing genes and their active promoter regions in the narrower and wider vanes of primary remiges, respectively |
GSE86415 |
Histone H3 Lysine 4 trimethylation (H3K4me3) ChIP-Seq and RNA-seq of narrower and wider vanes of primary remiges |
GSE86592 |
Developmental programs in chicken early embryos by whole transcriptome analysis. |
GSE87247 |
Chicken embryonic E16 scutate scale and feather samples |
GSE87250 |
Multiple regulatory modules are required for scale-to-feather conversion |
GSE100798 |
Avian zygote activates only maternal allele to disburden high variation of supernumerary sperms contrary to mammal |
GSE101403 |
Transcriptional Profiling of the Chicken Tracheal Response to Virulent Mycoplasma gallisepticum Strain Rlow |
GSE101746 |
DAN (NBL1) promotes collective neural crest migration by restraining uncontrolled invasion |
GSE102353 |
NANOG is required for the long-term establishment of avian somatic reprogrammed cells [chicken] |
GSE109970 |
NANOG is required for the long-term establishment of avian somatic reprogrammed cells |
GSE111098 |
ATAC-Seq of chicken embryonic metatarsal skin treated with RCAS-CTNNB1, RCAS-GFP, and retinoic acid |
GSE111101 |
Transcriptome analyses of reprogrammed feather / scale chimeric explants revealed co-expressed epithelial gene networks during organ specification |
GSE114103 |
Transciptomic profiling of the uterii of laying and non-laying hens using RNA-seq |
GSE114662 |
Genome wide analysis of chick limb bud tissue treated with FGF2 for 3hrs (RNA-Seq) |
GSE114663 |
Genome wide analysis of chick limb bud tissue treated with FGF2 for 3 hrs |
GSE115559 |
Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [RNA-Seq] |
GSE115562 |
Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [Capture Hi-C] |
GSE115563 |
Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. |
GSE119488 |
Evolution of Replication Origins in Vertebrate Genomes: Rapid Turnover Despite Selective Constraints [SNS-seq] |
GSE120498 |
Characterisation of the outflow tract banded heart utilising RNA sequencing to direct functional analysis |
GSE120823 |
RNA-Seq of adult chicken sickle feather tissues between male and female |
GSE121318 |
Reconstruction of the global neural crest gene regulatory network in vivo [ATAC-seq] |
GSE121331 |
Reconstruction of the global neural crest gene regulatory network in vivo [CRISPR_RNA-seq] |
GSE121527 |
Reconstruction of the global neural crest gene regulatory network in vivo |
GSE123588 |
Transciptomic profiling of the magnum of laying and non-laying hens using RNA-seq |
GSE124907 |
Gallus gallus reference-based transcriptome analysis of SRSF1-3 knock-in clones in DT40-ASF cells |
GSE125197 |
Molecular Profiling defines evolutionarily conserved transcription factor signatures of major vestibulospinal neuron groups |
GSE125707 |
Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages |
GSE125709 |
Early shaping of the chromatin landscape specifies vagal neural crest into distinct lineages [RNA-seq] |
GSE125710 |
Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages [CRISPR RNA-seq] |
GSE125711 |
Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages |
GSE126880 |
Heterodimerization of Tfap2 pioneer factors drives epigenomic remodeling during neural crest specification |
GSE128350 |
Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta |
GSE130439 |
Single cell transcriptomes of developing chicken hind limbs at stages HH25, HH29 and HH31 |
GSE130500 |
Reconstruction of the global neural crest gene regulatory network in vivo [RNA-seq] |
GSE131363 |
The effects of testosterone and corticosterone treatment on gene expression in germinal discs of the laying hen |
GSE131688 |
Reconstruction of the global neural crest gene regulatory network in vivo [single cell] |
GSE131737 |
Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages [RNA-seq and ChIP-seq] |
GSE134542 |
Innate immune genes up-regulated during infectious bursal disease virus infection in chicken embryos |
GSE134705 |
Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (scRNA-seq) |
GSE134706 |
Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (bulk RNA-seq) |
GSE134707 |
Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program |
GSE135553 |
Viral transcriptomic analysis of single cell-sorted of DF1 or MDCK cell lines infected with influenza A virus |
GSE135572 |
Probe-Seq enables transcriptional profiling of specific cell types from heterogeneous tissue by RNA-based isolation |
GSE136224 |
Folding Keratin Gene Clusters During Skin Specification |
GSE136774 |
Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae (RNA-seq data) |
GSE136775 |
Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae (ATAC-seq data) |
GSE136776 |
Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae |
GSE137219 |
miR-302 is a temporal regulator of neural crest development [Chicken miRNA-seq] |
GSE137241 |
miR-302 is a temporal regulator of neural crest development |
GSE137462 |
Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages [scRNA-seq] |
GSE142101 |
Metabolic reprogramming promotes neural crest migration via Yap/Tead signaling |
GSE143337 |
New insights into gonadal sex differentiation provided by single cell transcriptomics in the chicken embryo |
GSE149310 |
Next generation sequencing of chicken otocyst with pharmacologically induced loss-of-Wnt signalling |
GSE149457 |
Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis |
GSE150006 |
The connectome of neural crest enhancers reveals regulatory features of signaling systems |
GSE150007 |
Post-transcriptional tuning of FGF signaling mediates neural crest induction |
GSE151467 |
cis-regulation of Grem1 expression during limb development [ATAC HH24] |
GSE151488 |
cis-regulation of Grem1 expression during limb development |
GSE151697 |
Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors [CUT&RUN] |
GSE151707 |
Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors [ATAC-seq] |
GSE151947 |
Onecut1 and Otx2 directly regulate multiple genes expressed early in cone and horizontal cell development [scRNA-seq] |
GSE151948 |
Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors |
GSE152599 |
A regulatory sub-circuit downstream of Wnt signaling controls developmental transitions in neural crest development |
GSE153029 |
Transcriptional landscape of the embryonic chicken Müllerian duct |
GSE153566 |
Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain |
GSE157129 |
RNA-seq profiling of RPE reprogramming |
GSE161220 |
Regeneration of dermal papilla stem cells and mesenchymal components during feather cycling |
GSE161497 |
Gene expression across 4 and 24 hours of growth modulating paradigms in chicks |
GSE161638 |
Next generation sequencing of chicken otocyst with pharmacologicaly induced loss-of-Wnt signalling |
GSE161905 |
Single cell sequencing of posterior axis development in gallus gallus |
GSE162385 |
Gene expression in chicken skin cells cultured in vitro |
GSE164736 |
Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [ATAC-seq] |
GSE164737 |
Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [RNA-seq] |
GSE164738 |
Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development |
GSE166981 |
Unexpected contribution of fibroblasts to the muscle lineage during foetal myogenesis and role of BMP signalling in this process |
GSE171649 |
Single-cell analysis of early chick hypothalamic development reveals that hypothalamic cells are induced from prethalamic-like progenitors. |
GSE171864 |
RNA sequencing identifies sub-clinical hepatic response to stocking density |
GSE174565 |
Single cell transcriptomes of developing chicken hind limbs at stages HH21, HH24 and HH27 |
GSE174603 |
Whole-transcriptome sequencing of the chicken embryonic fibroblast, EGK.X blastoderm, and primordial germ cells |
GSE178651 |
Regional specific differentiation of integumentary organs: SATB2 is involved in α- and β-keratin gene cluster switching in the chicken |
GSE180176 |
Immunoglobulin enhancers increase RNA polymerase 2 stalling at somatic hypermutation target sequences [GRO-seq] |
GSE180177 |
Immunoglobulin enhancers increase RNA polymerase 2 stalling at somatic hypermutation target sequences [ChIP-Seq] |
GSE180178 |
Immunoglobulin enhancers increase RNA polymerase 2 stalling at somatic hypermutation target sequences |
GSE180434 |
Deciphering the resiquimod induced toll-like receptor signalling pathway in chickens |
GSE181577 |
Segregation of neural crest specific lineage trajectories from a heterogeneous neural plate border territory only emerges at neurulation |
GSE185078 |
An antibody independent verification method quantifies m6A in the chicken β-actin zipcode |
GSE193063 |
Transcriptomic analysis of attenuated Salmonella Typhimurium infected chicken primary macrophages |
GSE195592 |
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds |
GSE196761 |
Genome-wide replication fork directionality measured by strand-specific sequencing of Okazaki fragments in chicken lymphoma cells (DT40). |
GSE196999 |
Next generation sequencing of chicken otocyst with gain- and loss-of-Notch signalling activity |
GSE203031 |
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq] |
GSE205391 |
Effect of ectopic expression of EtROP2 kinase on gene expression of avian epithelial cells (Clec213) |
GSE206191 |
RNA polymerase II pausing contributes to maintain chromatin organization in erythrocytes [ATAC-seq] |
GSE206192 |
RNA polymerase II pausing contributes to maintain chromatin organization in erythrocytes [Hi-C] |
GSE206194 |
RNA polymerase II pausing contributes to maintain chromatin organization in erythrocytes |
GSE208178 |
Interspecific single-cell transcriptomic analysis reveals differences in signaling pathways governing gonadal primordial germ cells between chicken and zebra finch (Taeniopygia guttata) [chicken scRNA-seq] |
GSE212831 |
Cell-type identity of the avian utricle |
GSE227027 |
Comparative Gene Expression During Sinoatrial Node and Atrial Development |
GSE228335 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [NCC CUT&RUN] |
GSE228340 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [NCC ATAC-seq] |
GSE228341 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [SOX9 MO ATAC-seq] |
GSE228342 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [R-GNE-140 ATAC-seq] |
GSE228343 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks |
GSE230083 |
Next generation sequencing of chicken otocyst with genetically induced loss-of-Wnt signalling |
GSE230772 |
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [RNA-seq] |
GSE230776 |
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Slide-seq] |
GSE230778 |
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Spatial Transcriptomics] |
GSE230780 |
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA |
GSE231492 |
Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates |
GSE236181 |
Hox gene activity directs physical forces to differentially shape chick small and large intestinal epithelia |
GSE240187 |
Single cell RNA seq analysis of the chicken basilar papilla following in vivo aminoglycoside induced hair cell ablation |
GSE241256 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [CUT&RUN control and SOX9/TEA1-VPR over-expressing] |
GSE242458 |
Single-cell RNA sequencing of the spleen reveals differences in the mechanisms of resistance to bacterial infection between different chicken breeds |
GSE248766 |
Germ cell specific high level of H3K9me3 in chicken PGCs: distribution and role in gene expression control [ChIP-Seq] |
GSE248768 |
Germ cell specific high level of H3K9me3 in chicken PGCs: distribution and role in gene expression control |
GSE260533 |
Hox gene activity directs physical forces to differentially shape chick small and large intestinal epithelia |
GSE261503 |
Limb connective tissue is organized in a continuum of promiscuous fibroblast identities during development |
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Supplementary data files not provided |
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