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| Status |
Public on Oct 04, 2022 |
| Title |
Simple and Accurate Transcriptional Start Site Identification Using Smar2C2 |
| Organisms |
Glycine max; Oryza sativa; Sorghum bicolor; Triticum aestivum; Zea mays |
| Experiment type |
Other
|
| Summary |
We present Smart-Seq2 Rolling Circle to Concatemeric Consensus (Smar2C2) for the identification and quantification of transcription start sites. Smar2C2 allows for the identification of upwards of 70 million unique transcription start sites from a single sample with as little as 40 pg of RNA input.
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| |
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| Overall design |
Examination of transcriptoinal start sites using a novel technique across several plant species
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| |
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| Contributor(s) |
Murray A, Mendieta P, Vollmers C, Schmitz R |
| Citation(s) |
36030508 |
| |
| Submission date |
Feb 22, 2022 |
| Last update date |
Oct 05, 2022 |
| Contact name |
Robert J Schmitz |
| E-mail(s) |
schmitz@uga.edu
|
| Organization name |
University of Georgia
|
| Department |
Genetics
|
| Street address |
B416 Davison Life Sciences
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
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| Platforms (5)
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| GPL25409 |
Illumina NovaSeq 6000 (Triticum aestivum) |
| GPL25410 |
Illumina NovaSeq 6000 (Zea mays) |
| GPL27660 |
Illumina NovaSeq 6000 (Oryza sativa) |
| GPL28801 |
Illumina NovaSeq 6000 (Glycine max) |
| GPL28998 |
Illumina NovaSeq 6000 (Sorghum bicolor) |
|
| Samples (46)
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| Relations |
| BioProject |
PRJNA809198 |
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