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Series GSE197464 Query DataSets for GSE197464
Status Public on Aug 22, 2023
Title The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum [WES]
Organisms Aegilops bicornis; Aegilops longissima; Aegilops searsii; Aegilops speltoides; Amblyopyrum muticum; Aegilops sharonensis; Triticum dicoccoides
Experiment type Other
Summary To reveal the origin of the wheat B sub-genome, we performed the whole genome sequencing of sitopsis species. Besides, we also conducted the RNA seq of Ae.speltoides and hexaploid wheat Chinese Spring.
 
Overall design We conducted the whole genome sequencing of 5 species, whole exome sequencing of sitopsis.Besides, we also conducted the RNA-seq sequencing of 17 tissues of Ae.speltoides samples, 7 tissues of wheat.
 
Contributor(s) Yang Y
Citation(s) 36855304
Submission date Feb 25, 2022
Last update date Aug 23, 2023
Contact name Zefu Lu
E-mail(s) luzefu@live.com
Organization name Institute of Crop Sciences
Street address No.12 Zhongguancun South St.,Haidian District, Beijing, P.R.China
City Beijing
State/province Haidian
ZIP/Postal code 100081
Country China
 
Platforms (7)
GPL31956 Illumina NovaSeq 6000 (Aegilops speltoides)
GPL31990 Illumina NovaSeq 6000 (Aegilops bicornis)
GPL31991 Illumina NovaSeq 6000 (Aegilops longissima)
Samples (47)
GSM5917969 whole exome sequencing of CIae70
GSM5917970 whole exome sequencing of Y441
GSM5917971 whole exome sequencing of Y614
This SubSeries is part of SuperSeries:
GSE197593 The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum
Relations
BioProject PRJNA810475

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197464_RAW.tar 49.6 Gb (http)(custom) TAR (of VCF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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