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GEO accession:
Series GSE197593
Query DataSets for GSE197593
Status
Public on Aug 22, 2023
Title
The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum
Organisms
Aegilops bicornis
;
Aegilops longissima
;
Aegilops searsii
;
Triticum aestivum
;
Aegilops speltoides
;
Amblyopyrum muticum
;
Aegilops sharonensis
;
Triticum dicoccoides
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36855304
Submission date
Feb 28, 2022
Last update date
Aug 23, 2023
Contact name
Zefu Lu
E-mail(s)
luzefu@live.com
Organization name
Institute of Crop Sciences
Street address
No.12 Zhongguancun South St.,Haidian District, Beijing, P.R.China
City
Beijing
State/province
Haidian
ZIP/Postal code
100081
Country
China
Platforms (8)
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GPL25409
Illumina NovaSeq 6000 (Triticum aestivum)
GPL31956
Illumina NovaSeq 6000 (Aegilops speltoides)
GPL31990
Illumina NovaSeq 6000 (Aegilops bicornis)
GPL31991
Illumina NovaSeq 6000 (Aegilops longissima)
GPL31992
Illumina NovaSeq 6000 (Aegilops searsii)
GPL31993
Illumina NovaSeq 6000 (Aegilops sharonensis)
GPL31994
Illumina NovaSeq 6000 (Amblyopyrum muticum)
GPL31995
Illumina NovaSeq 6000 (Triticum dicoccoides)
Samples (122)
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GSM5907413
Ae.speltoides_grain_10day_Rep1
GSM5907414
Ae.speltoides_grain_10day_Rep2
GSM5907415
Ae.speltoides_grain_10day_Rep3
GSM5907416
Ae.speltoides_grain_15day_Rep1
GSM5907417
Ae.speltoides_grain_15day_Rep2
GSM5907418
Ae.speltoides_grain_15day_Rep3
GSM5907419
Ae.speltoides_grain_20day_Rep1
GSM5907420
Ae.speltoides_grain_20day_Rep2
GSM5907421
Ae.speltoides_grain_20day_Rep3
GSM5907422
Ae.speltoides_grain_4day_Rep1
GSM5907423
Ae.speltoides_grain_4day_Rep2
GSM5907424
Ae.speltoides_grain_4day_Rep3
GSM5907425
Ae.speltoides_flagleaf_10day_Rep1
GSM5907426
Ae.speltoides_flagleaf_10day_Rep2
GSM5907427
Ae.speltoides_flagleaf_10day_Rep3
GSM5907428
Ae.speltoides_flagleaf_15day_Rep1
GSM5907429
Ae.speltoides_flagleaf_15day_Rep2
GSM5907430
Ae.speltoides_flagleaf_15day_Rep3
GSM5907431
Ae.speltoides_flagleaf_20day_Rep1
GSM5907432
Ae.speltoides_flagleaf_20day_Rep2
GSM5907433
Ae.speltoides_flagleaf_20day_Rep3
GSM5907434
Ae.speltoides_floret_meristem_Rep1
GSM5907435
Ae.speltoides_floret_meristem_Rep2
GSM5907436
Ae.speltoides_floret_meristem_Rep3
GSM5907437
Ae.speltoides_glume_Rep1
GSM5907438
Ae.speltoides_glume_Rep2
GSM5907439
Ae.speltoides_glume_Rep3
GSM5907440
Ae.speltoides_leaf3day_Rep1
GSM5907441
Ae.speltoides_leaf3day_Rep2
GSM5907442
Ae.speltoides_leaf3day_Rep3
GSM5907443
Ae.speltoides_pistil_Rep1
GSM5907444
Ae.speltoides_pistil_Rep2
GSM5907445
Ae.speltoides_pistil_Rep3
GSM5907446
Ae.speltoides_pistil_Rep4
GSM5907447
Ae.speltoides_root3day_Rep1
GSM5907448
Ae.speltoides_root3day_Rep2
GSM5907449
Ae.speltoides_root3day_Rep3
GSM5907450
Ae.speltoides_stem10day_Rep1
GSM5907451
Ae.speltoides_stem10day_Rep2
GSM5907452
Ae.speltoides_stem10day_Rep3
GSM5907453
Ae.speltoides_stem15day_Rep1
GSM5907454
Ae.speltoides_stem15day_Rep2
GSM5907455
Ae.speltoides_stem15day_Rep3
GSM5907456
Ae.speltoides_stem20day_Rep1
GSM5907457
Ae.speltoides_stem20day_Rep2
GSM5907458
Ae.speltoides_stem20day_Rep3
GSM5907459
Ae.speltoides_spikelet_meristem_Rep1
GSM5907460
Ae.speltoides_spikelet_meristem_Rep2
GSM5907461
Ae.speltoides_spikelet_meristem_Rep3
GSM5907462
Ae.speltoides_stamen_Rep1
GSM5907463
Ae.speltoides_stamen_Rep2
GSM5907464
Ae.speltoides_stamen_Rep3
GSM5907465
Ae.speltoides_stamen_Rep4
GSM5907466
Ae.speltoides_stamen_Rep5
GSM5907467
T.aestivum_grain10day_Rep1
GSM5907468
T.aestivum_grain10day_Rep2
GSM5907469
T.aestivum_grain10day_Rep3
GSM5907470
T.aestivum_grain15day_Rep1
GSM5907471
T.aestivum_grain15day_Rep2
GSM5907472
T.aestivum_grain15day_Rep3
GSM5907473
T.aestivum_grain20day_Rep1
GSM5907474
T.aestivum_grain20day_Rep2
GSM5907475
T.aestivum_grain20day_Rep3
GSM5907476
T.aestivum_grain4day_Rep1
GSM5907477
T.aestivum_grain4day_Rep2
GSM5907478
T.aestivum_grain4day_Rep3
GSM5907479
T.aestivum_floret_meristem_Rep1
GSM5907480
T.aestivum_floret_meristem_Rep2
GSM5907481
T.aestivum_floret_meristem_Rep3
GSM5907482
T.aestivum_leaf3day_Rep1
GSM5907483
T.aestivum_leaf3day_Rep2
GSM5907484
T.aestivum_leaf3day_Rep3
GSM5907485
T.aestivum_root3day_Rep1
GSM5907486
T.aestivum_root3day_Rep2
GSM5907487
T.aestivum_root3day_Rep3
GSM5917969
whole exome sequencing of CIae70
GSM5917970
whole exome sequencing of Y441
GSM5917971
whole exome sequencing of Y614
GSM5917972
whole exome sequencing of Y615
GSM5917973
whole exome sequencing of Y770_Y2180
GSM5917974
whole exome sequencing of Y771_Y2181
GSM5917975
whole exome sequencing of PI604141
GSM5917976
whole exome sequencing of Y151
GSM5917977
whole exome sequencing of Y154
GSM5917978
whole exome sequencing of Y2138
GSM5917979
whole exome sequencing of Y431
GSM5917980
whole exome sequencing of Y432
GSM5917981
whole exome sequencing of TA2355
GSM5917982
whole exome sequencing of Y444
GSM5917983
whole exome sequencing of Y445
GSM5917984
whole exome sequencing of Y776_Y2132
GSM5917985
whole exome sequencing of Y778_Y2134
GSM5917986
whole exome sequencing of PI599149
GSM5917987
whole exome sequencing of PI584374
GSM5917988
whole exome sequencing of TA1995
GSM5917989
whole exome sequencing of Y436
GSM5917990
whole exome sequencing of Y437
GSM5917991
whole exome sequencing of Y609
GSM5917992
whole exome sequencing of Y610
GSM5917993
whole exome sequencing of Ae48
GSM5917994
whole exome sequencing of PI542260
GSM5917995
whole exome sequencing of PI542270
GSM5917996
whole exome sequencing of PI560528
GSM5917997
whole exome sequencing of PI560749
GSM5917998
whole exome sequencing of Y162
GSM5917999
whole exome sequencing of Y2020
GSM5918000
whole exome sequencing of Y2031
GSM5918001
whole exome sequencing of PI560122
GSM5918002
whole exome sequencing of PI560125
GSM5918003
whole exome sequencing of PI560126
GSM5918004
whole exome sequencing of PI560127
GSM5918005
whole exome sequencing of PI636562
GSM5918006
whole exome sequencing of W1516
GSM5918007
whole exome sequencing of W1525
GSM5918008
whole exome sequencing of W1530
GSM5918009
whole exome sequencing of W1532
GSM5918010
whole exome sequencing of W1533
GSM5918011
whole exome sequencing of W1536
GSM5918012
whole exome sequencing of W1538
GSM5918013
whole exome sequencing of W1539
GSM5918014
whole exome sequencing of W1542
GSM5918015
whole exome sequencing of W1544
This SuperSeries is composed of the following SubSeries:
GSE197048
The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum [RNA-seq]
GSE197464
The genome sequencing of Sitopsis species provide insights into its contribution to the B subgenome in Triticum aestivum [WES]
Relations
BioProject
PRJNA811134
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE197593_RAW.tar
49.6 Gb
(http)
(custom)
TAR (of TXT, VCF)
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