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| Status |
Public on Oct 23, 2022 |
| Title |
Transcriptome sequencing of Xenopus laevis animal caps at six time points in transit from pluripotency to 4 lineages: epidermal, neural, ventral mesoderm and endoderm |
| Organism |
Xenopus laevis |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The purpose of this study is to examine transciptome dynamics at high resolution to 4 separate lineages. Here we provide snapshots of the Xenopus laevis transcriptome at Nieuwkoop and Faber stages 9., 10, 10.5, 11, 12 and 13 for the epidmeral, neural, ventral mesoderm and endoderm lineage
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| Overall design |
Methods: mRNA profiles of Xenops animal cap populations at st9, 10, 10.5, 11, 12 13 in transit to the following lineages: epidermal (untreated), neural (100ng/uL noggin), ventral mesoderm (20ng/uL BMP4/7), endoderm (160ng/uL activin) were generated by Next Gen Sequencing
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| Contributor(s) |
Johnson K, LaBonne C |
| Citation(s) |
36273135 |
| Submission date |
Mar 14, 2022 |
| Last update date |
Feb 22, 2023 |
| Contact name |
Carole LaBonne |
| E-mail(s) |
clabonne@northwestern.edu
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| Organization name |
Northwestern University
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| Department |
Molecular Biosciences
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| Street address |
2205 Tech Dr
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| City |
Evanston |
| State/province |
IL |
| ZIP/Postal code |
60208 |
| Country |
USA |
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| Platforms (2) |
| GPL21248 |
Illumina NextSeq 500 (Xenopus laevis) |
| GPL22393 |
Illumina HiSeq 4000 (Xenopus laevis) |
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| Samples (74)
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| Relations |
| BioProject |
PRJNA816095 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE198598_LineageRestriction_TPM_updated-02-21-2023.csv.gz |
5.5 Mb |
(ftp)(http) |
CSV |
| GSE198598_LineageRestriction_ctsdata.csv.gz |
3.2 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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