NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE198905 Query DataSets for GSE198905
Status Public on Oct 16, 2023
Title Single-cell profiling of mouse cardio-pharyngeal development under maternal diabetes mellitus
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 39183978
Tomohiro Nishino, Sanjeev S Ranade, Angelo Pelonero, Benjamin J van Soldt, Lin Ye, Michael Alexanian, Frances Koback, Yu Huang, Langley Grace Wallace, Nandhini Sadagopan, Adrienne Lam, Lyandysha V Zholudeva, Feiya Li, Arun Padmanabhan, Reuben Thomas, Joke G van Bemmel, Casey A Gifford, Mauro W Costa, and Deepak Srivastava. Single-cell multimodal analyses reveal epigenomic and transcriptomic basis for birth defects in maternal diabetes. Nat Cardiovasc Res 2, 1190-1203 (2023). doi:10 1038/s44161-023-00367-y
Submission date Mar 17, 2022
Last update date Sep 27, 2024
Contact name Tomohiro Nishino
E-mail(s) tomo.nishino@gladstone.ucsf.edu
Organization name Gladstone Institutes (UCSF)
Department Cardiovascular Disease Institute
Lab Srivastava Lab
Street address 1650 Owens Street
City San Francisco
State/province California
ZIP/Postal code 94158
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM5958322 E105_Veh_01 ATAC-seq
GSM5958323 E105_Veh_02 ATAC-seq
GSM5958324 E105_Veh_03 ATAC-seq
This SuperSeries is composed of the following SubSeries:
GSE198866 Single-cell chromatin accessibility profiling of mouse cardio-pharyngeal development under maternal diabetes mellitus
GSE198901 Single-cell transcriptome profiling of mouse cardio-pharyngeal development under maternal diabetes mellitus
Relations
BioProject PRJNA817271

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE198905_RAW.tar 28.2 Gb (http)(custom) TAR (of TBI, TSV)
SRA Run SelectorHelp

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.