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| Status |
Public on Oct 05, 2022 |
| Title |
Exploration of the genome-wide DNA binding of chicken p53 in LMH cells |
| Organism |
Gallus gallus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To investigate the genome-wide DNA binding of chicken p53, we overexpressed chicken p53 with a flag in LMH cells. We then performed genome-wide DNA binding analysis using data obtained from ChIP-seq of LMH cells.
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| Overall design |
Comparative DNA binding profiling analysis of ChIP-seq data for DNA bound by p53 and input DNA of LMH cells with p53 overexpression. Four biological replicates for each condition have been done.
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| Contributor(s) |
Li H, Liu S |
| Citation(s) |
36167023 |
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| Submission date |
Apr 07, 2022 |
| Last update date |
Oct 06, 2022 |
| Contact name |
Hai Li |
| E-mail(s) |
lihai@xjtu.edu.cn
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| Organization name |
Xi'an Jiaotong University
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| Department |
Department of Pathogenic Microbiology and Immunology
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| Street address |
No.76 Yanta West Road
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| City |
Xi'an |
| ZIP/Postal code |
710061 |
| Country |
China |
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| Platforms (1) |
| GPL26853 |
Illumina NovaSeq 6000 (Gallus gallus) |
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| Samples (8)
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| GSM6032699 |
LMH cells, overexpression of chicken p53 with flag, Flag1 |
| GSM6032700 |
LMH cells, overexpression of chicken p53 with flag, Flag2 |
| GSM6032701 |
LMH cells, overexpression of chicken p53 with flag, Flag3 |
| GSM6032702 |
LMH cells, overexpression of chicken p53 with flag, Flag4 |
| GSM6032703 |
LMH cells, overexpression of chicken p53 with flag, Input1 |
| GSM6032704 |
LMH cells, overexpression of chicken p53 with flag, Input2 |
| GSM6032705 |
LMH cells, overexpression of chicken p53 with flag, Input3 |
| GSM6032706 |
LMH cells, overexpression of chicken p53 with flag, Input4 |
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| Relations |
| BioProject |
PRJNA824453 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE200405_RAW.tar |
1.5 Gb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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