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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 27, 2019 |
| Title |
Illumina NovaSeq 6000 (Gallus gallus) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Gallus gallus |
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| Submission date |
Jun 27, 2019 |
| Last update date |
Jun 27, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1059)
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GSM3908205, GSM3908206, GSM3908207, GSM3908208, GSM3908209, GSM3908210
GSM3908211, GSM3908212, GSM3908213, GSM3908214, GSM3908215, GSM3908216, GSM3908217, GSM3908218, GSM3908219, GSM3908220, GSM3908221, GSM3908222, GSM3908223, GSM3908224, GSM3908225, GSM3908226, GSM3908227, GSM3908228, GSM3908229, GSM3908230, GSM3908231, GSM3908232, GSM3908233, GSM3908234, GSM3908235, GSM3908236, GSM3908237, GSM3908238, GSM3908239, GSM3908240, GSM3908241, GSM3908242, GSM3908243, GSM3908244, GSM4594236, GSM4610472, GSM4610473, GSM4610474, GSM4610475, GSM4610476, GSM4610477, GSM4610478, GSM4610479, GSM4610480, GSM4669879, GSM4669880, GSM4669881, GSM4669882, GSM4773980, GSM4773981, GSM4773982, GSM4773983, GSM4773984, GSM4773985, GSM4773986, GSM4773987, GSM4861797, GSM4861798, GSM4861799, GSM4861800, GSM4861801, GSM4861802, GSM4861803, GSM4861804, GSM4861805, GSM4861806, GSM4861807, GSM4861808, GSM4861809, GSM4861810, GSM4861811, GSM4861812, GSM4861813, GSM4861814, GSM4861815, GSM4861816, GSM4861817, GSM4861818, GSM4861819, GSM4861820, GSM4861821, GSM4861822, GSM4861823, GSM4861824, GSM4861825, GSM4861826, GSM4861827, GSM4861828, GSM4861829, GSM4861830, GSM4861831, GSM4861832, GSM4873767, GSM4873977, GSM4873978, GSM4873979, GSM4873980, GSM4873981, GSM4873982, GSM4873983, GSM4873984, GSM4873985, GSM4876527, GSM4876532, GSM4876541, GSM4956397, GSM4956398, GSM4956399, GSM4956400, GSM4956401, GSM4956402, GSM4956403, GSM4956404, GSM4975421, GSM4975422, GSM4975423, GSM4975424, GSM4975425, GSM4975426, GSM4975427, GSM4975428, GSM4975429, GSM4975430, GSM4975431, GSM4975432, GSM4975433, GSM4975434, GSM4975435, GSM4975436, GSM4975437, GSM4975438, GSM4989430, GSM4989431, GSM4989432, GSM4989433, GSM4989434, GSM4989435, GSM4989436, GSM4989437, GSM4989438, GSM4989439, GSM4989440, GSM4989441, GSM4989442, GSM4989443, GSM4989444, GSM4989445, GSM4989446, GSM4989447, GSM4989448, GSM4989449, GSM4989450, GSM4989451, GSM4989452, GSM4989453, GSM4989454, GSM4989455, GSM4989456, GSM4989457, GSM4989458, GSM4989459, GSM4989460, GSM4989461, GSM4989462, GSM4989463, GSM4989464, GSM4989465, GSM4989466, GSM4989467, GSM4989468, GSM4989469, GSM4989470, GSM4989471, GSM4989472, GSM4989473, GSM4989474, GSM4989475, GSM4989476, GSM4989477, GSM4989478, GSM4989479, GSM4989480, GSM4989481, GSM4989482, GSM4989483, GSM4989484, GSM4989485, GSM4989486, GSM5005350, GSM5005351, GSM5005352, GSM5005353, GSM5005354, GSM5005355, GSM5005356, GSM5005357, GSM5005358, GSM5005359, GSM5005360, GSM5005361, GSM5005362, GSM5005363, GSM5005364, GSM5005365, GSM5005366, GSM5005367, GSM5005368, GSM5005369, GSM5005370, GSM5005371, GSM5005372, GSM5005373, GSM5076721, GSM5076722, GSM5076723, GSM5076724, GSM5076725, GSM5076726, GSM5104042, GSM5104043, GSM5104044, GSM5104045, GSM5258430, GSM5258431, GSM5258432, GSM5258433, GSM5258435, GSM5258436, GSM5258437, GSM5258438, GSM5360653, GSM5360654, GSM5360655, GSM5360656, GSM5360657, GSM5360658, GSM5360659, GSM5360660, GSM5360661, GSM5360662, GSM5403771, GSM5403772, GSM5403773, GSM5403774, GSM5403775, GSM5403776, GSM5425565, GSM5425566, GSM5425567, GSM5425568, GSM5425569, GSM5425570, GSM5425571, GSM5425572, GSM5425573, GSM5425574, GSM5425575, GSM5425576, GSM5425577, GSM5425578, GSM5425579, GSM5460952, GSM5460953, GSM5460954, GSM5460955, GSM5462879, GSM5462880, GSM5462881, GSM5462882, GSM5462883, GSM5510465, GSM5510466, GSM5510467, GSM5510468, GSM5510469, GSM5510470, GSM5510471, GSM5510472, GSM5510473, GSM5510474, GSM5510475, GSM5510476, GSM5510477, GSM5510478, GSM5510479, GSM5510480, GSM5510481, GSM5510482, GSM5518301, GSM5518302, GSM5518303, GSM5518304, GSM5518305, GSM5518306, GSM5547915, GSM5547916, GSM5547917, GSM5547918, GSM5547919, GSM5547920, GSM5547921, GSM5547922, GSM5547923, GSM5547924, GSM5547925, GSM5547926, GSM5547927, GSM5547928, GSM5547929, GSM5547930, GSM5547931, GSM5547932, GSM5547933, GSM5547934, GSM5623389, GSM5623634, GSM5660318, GSM5660319, GSM5660320, GSM5660321, GSM5660322, GSM5660323, GSM5660324, GSM5660325, GSM5660326, GSM5660327, GSM5703994, GSM5703995, GSM5703996, GSM5703997, GSM5703998, GSM5703999, GSM5704000, GSM5704001, GSM5704002, GSM5704003, GSM5704004, GSM5704005, GSM5768021, GSM5768022, GSM5768023, GSM5768024, GSM5768025, GSM5768026, GSM5768027, GSM5768028, GSM5768029, GSM5768030, GSM5768031, GSM5768032, GSM5836878, GSM5836879, GSM5897063, GSM5897064, GSM5897065, GSM5897066, GSM5897067, GSM5897068, GSM5934225, GSM5934226, GSM5934227, GSM5934228, GSM5934229, GSM5934230, GSM5934231, GSM5934232, GSM5934233, GSM5934234, GSM5934235, GSM5934236, GSM5934237, GSM5934238, GSM5934239, GSM5934240, GSM5934241, GSM5934242, GSM5954860, GSM5954861, GSM5954862, GSM5954863, GSM5965528, GSM5965529, GSM5965530, GSM5965531, GSM5965532, GSM5965533, GSM5984203, GSM5984204, GSM5984205, GSM5984206, GSM5984207, GSM5984208, GSM5984209, GSM5984210, GSM5984211, GSM5984212, GSM5984213, GSM5984214, GSM5984215, GSM5984216, GSM5984217, GSM5984218, GSM5984219, GSM5984220, GSM5984221, GSM5984222, GSM5984223, GSM5984224, GSM5984225, GSM5984226, GSM5984227, GSM5984228, GSM5984229, GSM5984230, GSM5984231, GSM5984232, GSM5984233, GSM5984234, GSM5984235, GSM5984236, GSM5984237, GSM5984238, GSM5984239, GSM5984240, GSM5984241, GSM5984242, GSM6031805, GSM6031806, GSM6031807, GSM6031808, GSM6031809, GSM6031810, GSM6031811, GSM6031812, GSM6031813, GSM6031814, GSM6032699, GSM6032700, GSM6032701, GSM6032702, GSM6032703, GSM6032704, GSM6032705, GSM6032706, GSM6035364, GSM6035365, GSM6086522, GSM6086523, GSM6086524, GSM6086525, GSM6086526, GSM6086527, GSM6086528, GSM6086529, GSM6086530, GSM6086531, GSM6086532, GSM6086533, GSM6086534, GSM6086535, GSM6086536, GSM6086537, GSM6086538, GSM6086539, GSM6086540, GSM6086541, GSM6086542, GSM6086543, GSM6086544, GSM6086545, GSM6098323, GSM6098324, GSM6098325, GSM6098326, GSM6098327, GSM6098328, GSM6098329, GSM6098330, GSM6162947, GSM6162949, GSM6162950, GSM6162952, GSM6162953, GSM6162954, GSM6162956, GSM6162957, GSM6162959, GSM6162960, GSM6162961, GSM6162963, GSM6162964, GSM6162966, GSM6162967, GSM6162968...
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| Series (94)
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| GSE133401 |
Transcriptome of eight rooster (Leghorn) tissues for identification of differentially expressed genes |
| GSE151947 |
Onecut1 and Otx2 directly regulate multiple genes expressed early in cone and horizontal cell development [scRNA-seq] |
| GSE152268 |
Systematic Analysis of Long Noncoding RNA and mRNA in Granulosa Cells During the Hen Ovulatory Cycle |
| GSE154375 |
Ignition of supporting cell activation for hair cell regeneration in the avian auditory epithelium: an explant culture model |
| GSE157728 |
CUT&Tag for analysis of Nrf2-regulated genes in liver of heat-stressed chicken (Gallus gallus) |
| GSE160169 |
Dual RNA-seq transcriptome analysis of chicken caeca infected with Eimeria tenella |
| GSE160471 |
Single nucleus RNAseq of cerebellar nucleus neurons in three species |
| GSE160489 |
Next Generation Sequencing Facilitates Quantitative Analysis of basic diet-treated (CON)，lipopolysaccharide-treated(LPS), or lipopolysaccharide+genistein treated broiler chicks (GEN) thymic Transcriptomes |
| GSE160653 |
The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq] |
| GSE160654 |
The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ChIP-seq] |
| GSE160657 |
The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo |
| GSE162661 |
CUT&Tag for analysis of Nrf2-regulated genes in liver of heat-stressed chicken (Gallus gallus) |
| GSE163238 |
Nanopore sequencing reveals the roles of spermatozoal DNA N6-Methyladenine modification in mediating transgenerational lipid metabolism disorder induced by folic acid excessive consumption in chicken [RNA-seq] |
| GSE163889 |
Comparative analysis among different species reveals that androgen receptor is a core transcriptional factor regulating the chicken follicular selection and ovulation [ChIP-Seq] |
| GSE163890 |
Comparative analysis among different species reveals that androgen receptor is a core transcriptional factor regulating the chicken follicular selection and ovulation [RNA-Seq] |
| GSE163891 |
Comparative analysis among different species reveals that the androgen receptor regulates chicken follicle selection through species-specific genes related to follicle development |
| GSE164260 |
Next Generation Sequencing of ileum in broiler infected with S. pullorum |
| GSE166632 |
A functional map of genomic HIF1α-DNA complexes in the eye lens revealed through multiomics analysis [RNA-seq] |
| GSE166633 |
A functional map of genomic HIF1α-DNA complexes in the eye lens revealed through multiomics analysis |
| GSE167377 |
From nasal to basal: Single-cell sequence illustrates the winding infection route for IBDV and its influence on bursal cells |
| GSE172606 |
Engineering skeletal muscle tissues with advanced maturity improves synapse formation with human induced pluripotent stem cell-derived motor neurons |
| GSE176247 |
Paneth cell plays critical role during the regulation of Lactobacillus salivarius and Lactobacillus agilis on the activity of intestinal stem cell in hens |
| GSE179020 |
DRG-CSC co-culture tissue engineered model, CSCs monoculture model and DRG monoculture model |
| GSE179643 |
RNA Profiles of the Korat Chicken Breast Muscle with Increased Carnosine Content Produced through Dietary Supplementation with β-Alanine or L-Histidine |
| GSE180336 |
Inter-species comparison of little skate motor neuron gene expression with chick and mouse |
| GSE180337 |
little skate motor neuron |
| GSE180441 |
GM-free immortalization and high yield production of cultured chicken [WGS] |
| GSE180442 |
GM-free immortalization and high yield production of cultured chicken |
| GSE181756 |
Dynamic transcriptome and chromatin architecture in granulosa cells during chicken folliculogenesis |
| GSE182083 |
Comparative analysis among different species reveals that androgen receptor is a core transcriptional factor regulating the chicken follicular selection and ovulation [RNA-Seq 2] |
| GSE182967 |
Transcriptome of chicken spleens with Escherichia coli infection |
| GSE185768 |
Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs [Hi-C] |
| GSE185774 |
Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs [ATAC-Seq] |
| GSE185775 |
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes |
| GSE186742 |
Embryonic heat conditioning in chicks induces transgenerational heat/immunological resilience via methylation on regulatory elements |
| GSE189566 |
Early-life thermal stress mediates long-term alterations in hypothalamic microglia [RNA-Seq] |
| GSE189567 |
Early-life thermal stress mediates long-term alterations in hypothalamic microglia |
| GSE192892 |
MeRIP Sequencing of Tumor Livers Induced by ALV-J Infection in Chickens |
| GSE195445 |
Cross-Species Single-cell Comparative Analysis of Amygdala |
| GSE196630 |
Changes in DNA Methylation Hallmark Alterations In Chromatin Accessibility And Gene Expression For Eye Lens Differentiation [RNA-seq] |
| GSE196631 |
Changes in DNA Methylation Hallmark Alterations In Chromatin Accessibility And Gene Expression For Eye Lens Differentiation |
| GSE197937 |
Gene expression (mRNA-seq) in the developing chicken retinal pigment epithelium |
| GSE197938 |
OTX2 regulatory network and maturation-associated gene programs are inherent barriers to RPE neural competency |
| GSE199162 |
Bulk sequencing of MYCN-overexpressing chicken retinal cell lines |
| GSE199780 |
Transcriptome of the chicken chorioallantoic membrane from male and female embryos, after 11 and 15 days of incubation |
| GSE200347 |
The Effects of Nitric Oxide on Choroidal Gene Expression |
| GSE200405 |
Exploration of the genome-wide DNA binding of chicken p53 in LMH cells |
| GSE200516 |
Single-cell analysis reveals gene expression profiles and cell types in wooden breast myopathy |
| GSE202003 |
Transcriptomics of hypothalamic responses of broiler chickens fed L-citrulline supplemented diets under different ambient temperatures |
| GSE202128 |
Single cell RNA-seq in chicken's lung and DF-1 cell line |
| GSE203595 |
A method to investigate muscle target-specific transcriptional signatures of single motor neurons |
| GSE206194 |
RNA polymerase II pausing contributes to maintain chromatin organization in erythrocytes |
| GSE208230 |
Transcriptome-wide N6-methyladenosine modification profiling of mRNAs during infection of Newcastle disease virus in Chicken Macrophages |
| GSE208411 |
Host transcriptome profiling analysis induced by Md5BAC △meq△pp38, Md5BAC △LORF9, Md5BAC △UL23 recombinant viruses |
| GSE208699 |
Infection phase-dependent dynamics of the viral and host N6-methyladenosine epitranscriptome in the lifecycle of an oncogenic virus in vivo |
| GSE213480 |
Transcriptome changes with GSK-J4 treatment in an ex vivo post-cataract surgery model |
| GSE217310 |
Targeted modulation of chicken genes in vitro using CRISPRa and CRISPRi toolkit |
| GSE218287 |
Integrative Analysis of the Ovarian Metabolome and Transcriptome of the Yaoshan Chicken and its Hybrids |
| GSE220921 |
Newcastle disease virus activates methylation-related enzymes to reprogram m6A Methylation in infected cells |
| GSE221188 |
Maintenance of pluripotency signature in the entire ectoderm enables potential for neural crest formation [scRNASeq] |
| GSE221190 |
Maintenance of pluripotency in the entire ectoderm enables neural crest formation and challenges dogmatic viewpoints of gastrulation |
| GSE223444 |
Effect of FGF singaling inhibition on gene expression on limb bud mesenchyme explants. |
| GSE224123 |
Changes in miRNA expression during infection with strong IBDV strains |
| GSE224169 |
Gene expression of dissected portions of the chicken embryo gastrula after homochronic and heterochronic grafts of somite progenitors |
| GSE224329 |
Single-cell RNA seq mapping of chicken leukocytes |
| GSE226458 |
Bulk RNA-sequencing of MYCN-overexpressing chicken retinal cell lines |
| GSE227724 |
Daily Patterns of Retinal and Choroidal Gene Expression and Circadian Biology in Myopia Pathogenesis |
| GSE228339 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks [scATAC-seq] |
| GSE228343 |
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks |
| GSE228694 |
RNA polymerase II pausing contributes to maintain chromatin organization in erythrocytes [ChIP-Seq] |
| GSE231912 |
Transcriptome profiling of the liver and pectoralis major muscle in slow-growing chickens under an organic raising system |
| GSE232032 |
Lin28 is essential for the maintenance of chicken primordial germ cells |
| GSE234076 |
Host transcriptome profiling analysis induced byMd5BAC, Md5BAC △LORF9, Md5BAC △UL23,Md5BAC △LORF9-Re, Md5BAC △UL23-Re reconbinant viruses. |
| GSE235684 |
Single Cell Transcriptomics Identifies Distinct Choroid Cell Populations Involved in Visually Guided Eye Growth |
| GSE236902 |
Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology [scRNA-seq] |
| GSE236903 |
Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology [Multiome snRNA/snATAC] |
| GSE236905 |
Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology. |
| GSE239368 |
Changes in gene expression time 0 vs. 1hr post-cataract sugery wounding in the lens |
| GSE242228 |
Single-cell profiling coupled with lineage analysis reveals vagal and sacral neural crest contributions to the developing enteric nervous system |
| GSE242700 |
Trunk neural crest gene MOXD1 affects embryonic development |
| GSE246996 |
Aberrant expression of the DCT gene is implicated in the hyperpigmentation of the visceral peritoneum of the chicken |
| GSE249097 |
Genome-wide mapping of MEF2A binding sites by CUT&Tag-seq in chicken primary myoblasts |
| GSE249652 |
Host transcriptomic response to a bacterial toxin at single-nuclei resolution |
| GSE251682 |
Single-cell RNA transcriptome reveals heterogeneity and dynamics of cells during skeletal muscle development in different chicken breeds |
| GSE252616 |
SOCS2 contributes to reduction of the third digit during development of the chicken forelimb |
| GSE254181 |
Centromeric chromatin in mitosis reorganizes into a functional structure stabilized by cohesin [CENPA-ChIP-seq] |
| GSE254182 |
Centromeric chromatin in mitosis reorganizes into a functional structure stabilized by cohesin |
| GSE254659 |
Centromeric chromatin in mitosis reorganizes into a functional structure stabilized by cohesin [NG-Capture-C] |
| GSE255760 |
Integrative 3D Genomics with Multi-Omics Analysis and Functional Validation of Genetic Regulatory Mechanisms of Abdominal Fat Deposition in Chickens (ATAC-seq). |
| GSE258895 |
Hox gene activity directs physical forces to differentially shape chick small and large intestinal epithelia |
| GSE266119 |
Influence of DNA-methylation at multiple stages of limb chondrogenesis |
| GSE270913 |
Comprehensive transcriptome analysis of CIAV infected MDCC-MSB1 cells [RNA-seq] |
| GSE272225 |
In vitro assessment of the immunomodulatory effects of probiotic Bacillus strains on chicken PBMCs |
| GSE276954 |
A single-nucleus census of immune and non-immune cell types for the major immune organ systems of chicken |
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| Supplementary data files not provided |
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