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Series GSE201802 Query DataSets for GSE201802
Status Public on Jul 12, 2022
Title Histone deacetylation primes chromatin to preserve epigenetic memory for self-propagation of heterochromatin domains [Clr3-CDx2]
Organism Schizosaccharomyces pombe
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Clr3-CDx2 occupancy along fission yeast chromosomes.
Chromodomain-mediated loading targets Clr3-CDx2 to heterochromatin domains.
 
Overall design DNA co-purified with Clr3-CDx2 chromatin was random-prime PCR amplified and analyzed using custom 60mer Agilent array that tiles Schizosaccharomyces pombe genome in 300bp intervals.
 
Contributor(s) Zofall M, Sandhu R, Holla S, Wheeler D, Grewal SI
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 28, 2022
Last update date Oct 11, 2022
Contact name Shiv Grewal
Phone 2407607553
Organization name NCI
Department LBMB
Lab Shiv Grewal
Street address NCI bldg 37 Rm 6068 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL6503 Agilent-016010 S.pombe 4X44K_v3 (Feature Number version)
Samples (2)
GSM6071751 Clr3-HA-CDx2 in tetR-clr4-ON wt cells
GSM6071752 untagged Clr3 in tetR-clr4-ON wt cells
This SubSeries is part of SuperSeries:
GSE184466 Histone deacetylation primes chromatin to preserve epigenetic memory for self-propagation of heterochromatin domains
Relations
BioProject PRJNA833077

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201802_RAW.tar 8.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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