GEO help: Mouse over screen elements for information.
Status
Public on Mar 31, 2008
Title
Agilent-016010 S.pombe 4X44K_v3 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Schizosaccharomyces pombe Manufacturer
Agilent
Manufacture protocol
Custom 60mer oligonucleotide microarrays based upon Agilent’s non-contact in situ synthesis process
Description
Agilent 60mer oligo arrays tiling entire S. pombe genome across 3 chromsomes at 300bp interval alternately from the plus and minus strand.ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Chromosome_contigs/OLD/Sep_15_2004
Web link
http://www.agilent.com/ Contributor(s)
Zhang K , Mosch K , Fischle W , Grewal SI Submission date
Feb 19, 2008
Last update date
Sep 19, 2016
Contact name
Shiv Grewal
Phone
2407607553
Organization name
NCI
Department
LBMB
Lab
Shiv Grewal
Street address
NCI bldg 37 Rm 6068 9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (259)
GSM276890 , GSM432595 , GSM432596 , GSM817345 , GSM826266 , GSM826267
GSM826268 ,
GSM826269 ,
GSM826554 ,
GSM967449 ,
GSM967450 ,
GSM967451 ,
GSM967452 ,
GSM1020790 ,
GSM1020791 ,
GSM1020792 ,
GSM1020793 ,
GSM1020794 ,
GSM1020795 ,
GSM1020796 ,
GSM1020797 ,
GSM1131346 ,
GSM1131347 ,
GSM1367139 ,
GSM1367140 ,
GSM1367141 ,
GSM1367142 ,
GSM1370190 ,
GSM1370191 ,
GSM1370192 ,
GSM1370193 ,
GSM1370194 ,
GSM1545277 ,
GSM1545278 ,
GSM1545279 ,
GSM1545280 ,
GSM1545281 ,
GSM1545282 ,
GSM1545283 ,
GSM1545284 ,
GSM1545285 ,
GSM1545286 ,
GSM1545287 ,
GSM1545288 ,
GSM1545289 ,
GSM1545290 ,
GSM1545291 ,
GSM1545292 ,
GSM1545293 ,
GSM1545294 ,
GSM1545295 ,
GSM1545296 ,
GSM1545297 ,
GSM1545298 ,
GSM1545299 ,
GSM1545300 ,
GSM1545301 ,
GSM1545302 ,
GSM1545303 ,
GSM1545304 ,
GSM1545305 ,
GSM1545306 ,
GSM1545307 ,
GSM1545308 ,
GSM1545309 ,
GSM1545310 ,
GSM1545311 ,
GSM1545312 ,
GSM1545313 ,
GSM1545314 ,
GSM1545315 ,
GSM1545316 ,
GSM1931604 ,
GSM1931605 ,
GSM1931606 ,
GSM1931607 ,
GSM1931608 ,
GSM1931609 ,
GSM1931610 ,
GSM1931611 ,
GSM1931612 ,
GSM1931613 ,
GSM1974403 ,
GSM1974404 ,
GSM1974405 ,
GSM1974406 ,
GSM1974407 ,
GSM1974408 ,
GSM1974409 ,
GSM1974410 ,
GSM1974411 ,
GSM1974412 ,
GSM1974413 ,
GSM1974414 ,
GSM1974415 ,
GSM1974416 ,
GSM1974417 ,
GSM1974418 ,
GSM2042507 ,
GSM2042508 ,
GSM2042509 ,
GSM2042510 ,
GSM2042511 ,
GSM2042512 ,
GSM2078220 ,
GSM2078221 ,
GSM2078222 ,
GSM2078223 ,
GSM2078224 ,
GSM2078225 ,
GSM2078226 ,
GSM2078227 ,
GSM2078228 ,
GSM2078229 ,
GSM2078230 ,
GSM2078231 ,
GSM2078232 ,
GSM2078233 ,
GSM2078234 ,
GSM2078235 ,
GSM2078236 ,
GSM2078237 ,
GSM2078238 ,
GSM2078239 ,
GSM2078240 ,
GSM2078241 ,
GSM2322724 ,
GSM2322725 ,
GSM2322726 ,
GSM2322727 ,
GSM2322728 ,
GSM2322729 ,
GSM2322730 ,
GSM2322731 ,
GSM2322732 ,
GSM2322733 ,
GSM2322734 ,
GSM2354074 ,
GSM2354075 ,
GSM2354076 ,
GSM2354077 ,
GSM2354078 ,
GSM2354079 ,
GSM2354080 ,
GSM2354081 ,
GSM2354082 ,
GSM2354083 ,
GSM2354084 ,
GSM2389483 ,
GSM2389484 ,
GSM2449888 ,
GSM2449889 ,
GSM2545579 ,
GSM2545580 ,
GSM2545581 ,
GSM2545582 ,
GSM2545583 ,
GSM2545584 ,
GSM2545585 ,
GSM2545586 ,
GSM2545587 ,
GSM2545588 ,
GSM2545589 ,
GSM2545590 ,
GSM2545591 ,
GSM2802865 ,
GSM2802866 ,
GSM2802867 ,
GSM2802868 ,
GSM2802869 ,
GSM2802870 ,
GSM2802871 ,
GSM2995512 ,
GSM2995513 ,
GSM3734247 ,
GSM3734248 ,
GSM3734249 ,
GSM3734250 ,
GSM3734251 ,
GSM3734252 ,
GSM3895217 ,
GSM3895218 ,
GSM3895219 ,
GSM3895220 ,
GSM3895221 ,
GSM3895222 ,
GSM3895223 ,
GSM3895224 ,
GSM3895225 ,
GSM3895226 ,
GSM3895227 ,
GSM3895228 ,
GSM3895229 ,
GSM3895230 ,
GSM3895231 ,
GSM3895232 ,
GSM3895233 ,
GSM3895234 ,
GSM3895235 ,
GSM3895236 ,
GSM3895237 ,
GSM3895238 ,
GSM4230300 ,
GSM4230301 ,
GSM4230302 ,
GSM4230303 ,
GSM4230304 ,
GSM4230305 ,
GSM4230306 ,
GSM4230307 ,
GSM4230308 ,
GSM4230309 ,
GSM4230310 ,
GSM4230311 ,
GSM4230312 ,
GSM4230313 ,
GSM4230314 ,
GSM4230315 ,
GSM4725499 ,
GSM4725500 ,
GSM4725501 ,
GSM4725502 ,
GSM4725503 ,
GSM4725504 ,
GSM4725505 ,
GSM4957572 ,
GSM4957573 ,
GSM4957574 ,
GSM4957575 ,
GSM4957576 ,
GSM4957577 ,
GSM4957578 ,
GSM4957579 ,
GSM4957580 ,
GSM4957581 ,
GSM4957582 ,
GSM4957583 ,
GSM4957584 ,
GSM4957585 ,
GSM4957586 ,
GSM4957587 ,
GSM4987132 ,
GSM4987133 ,
GSM4987134 ,
GSM4987135 ,
GSM4987136 ,
GSM4987137 ,
GSM4987138 ,
GSM4987139 ,
GSM5341431 ,
GSM5341432 ,
GSM5341433 ,
GSM5341434 ,
GSM6071751 ,
GSM6071752 ,
GSM7763468 ,
GSM7763469 ,
GSM7910993 ,
GSM7910994 Series (44)
GSE10561 Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin
GSE17271 Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
GSE32996 An SRY homolog cooperates with a transposon-derived CENP-B protein to control sex-specific directed recombination
GSE33404 RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation
GSE39404 CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons
GSE41642 RNAi triggered by specialized machinery silences developmental genes and retrotransposons (ChIP-chip)
GSE41643 RNAi triggered by specialized machinery silences developmental genes and retrotransposons
GSE46505 Yeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts [ChIP-chip]
GSE46506 Yeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts
GSE56847 High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture [microarray CGH]
GSE56848 High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture [ChIP-chip]
GSE56849 High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture
GSE63301 Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase
GSE74740 A conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing [ChIP-chip]
GSE74741 A conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing
GSE76111 The fission yeast Schizosaccharomyces pombe: H3K9me2, Erh1-GFP and CFP-Mmi1 ChIP-chip
GSE76114 Expression profiling and ChIP-chip of Schizosaccharomyces pombe strains wildtype, erh1∆, and ccr4∆
GSE77015 Untimely expression of gametogenic genes in vegetative cells causes uniparental disomy (ChIP-chip)
GSE77050 Untimely expression of gametogenic genes in vegetative cells causes uniparental disomy
GSE78819 Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [BrdU]
GSE78820 Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [H3K9me2]
GSE78821 Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [Rec12]
GSE78822 Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [Taz1]
GSE78823 Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins
GSE88902 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome [H3K9me2 ChIP]
GSE88903 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome [BrdU IP]
GSE88904 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome
GSE93273 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome [HU + BrdU IP]
GSE96880 Shelterin Mediates Genome Reorganization in Response to Replication Stress (BrdU IP)
GSE96881 Shelterin Mediates Genome Reorganization in Response to Replication Stress (Microarray CGH)
GSE96882 Shelterin Mediates Genome Reorganization in Response to Replication Stress (ChIP-chip)
GSE96883 Shelterin Mediates Genome Reorganization in Response to Replication Stress
GSE104528 The fission yeast Schizosaccharomyces pombe: H3K9me2 and Fep1-GFP ChIP-chip
GSE104547 The fission yeast Schizosaccharomyces pombe
GSE130233 Cohesin has a deleterious effect on heterochromatin assembly in fission yeast cells lacking Pds5
GSE132862 Nuclear peripheral positioning of heterochromatin by Amo1NUPL2 suppresses nucleosome turnover to promote epigenetic inheritance [ChIP-chip_C300]
GSE132865 Nuclear peripheral positioning of heterochromatin by Amo1NUPL2 suppresses nucleosome turnover to promote epigenetic inheritance
GSE142486 TOR targets a nuclear RNA processing network to support cell proliferation and control developmental gene expression [ChIP-chip]
GSE142488 TOR targets an RNA processing network to regulate facultative heterochromatin, developmental gene expression and cell proliferation
GSE162701 A critical density of histone H3 lysine 9 tri-methylation is required for propagation of heterochromatin and epigenetic inheritance
GSE184466 Histone deacetylation primes chromatin to preserve epigenetic memory for self-propagation of heterochromatin domains
GSE201802 Histone deacetylation primes chromatin to preserve epigenetic memory for self-propagation of heterochromatin domains [Clr3-CDx2]
GSE242429 Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance [ChIP-chip H3K9me3]
GSE242431 Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance
Data table header descriptions ID Agilent Feature ID number
PROBE_ID RANGE_GB RANGE_START Start Chromosome position
RANGE_END End Chromosome Position
Description Probe description
SPOT_ID Probe Name (The probe name contains info about a probe's strandedness and approximate location (within 300bp window) on a given chromosome: chr1_2782_834600 indicates the 2782th probe on chromosome 1 at approximate position 834,600 bp; chr3_4893_1467900_R indicates the 4893th probe on chromosome 3 at approximate position 1,467,900 bp, reverse strand).
Data table ID PROBE_ID RANGE_GB RANGE_START RANGE_END Description SPOT_ID 1
GE_BrightCorner
CONTROL: GE_BrightCorner
2
DarkCorner
CONTROL: DarkCorner
3
DarkCorner
CONTROL: DarkCorner
4
DarkCorner
CONTROL: DarkCorner
5
DarkCorner
CONTROL: DarkCorner
6
DarkCorner
CONTROL: DarkCorner
7
DarkCorner
CONTROL: DarkCorner
8
DarkCorner
CONTROL: DarkCorner
9
DarkCorner
CONTROL: DarkCorner
10
DarkCorner
CONTROL: DarkCorner
11
DarkCorner
CONTROL: DarkCorner
12
chr1_17479_5243700_R
NC_003424.3
5249066
5249125
SPAC14C4.11
13
chr1_6363_1908900_R
NC_003424.3
1909124
1909183
SPAC140.05
14
chr3_7185_2155500
NC_003421.2
2155645
2155704
SPCC1620.06c
15
chr1_16562_4968600
NC_003424.3
4973858
4973917
SPAC1952.04c
16
chr1_5621_1686300_R
NC_003424.3
1686407
1686466
SPAC824.02
17
chr2_4678_1403400
NC_003423.3
1403605
1403664
18
chr3_3640_1092000_Rf
NC_003421.2
1092068
1092127
cen3a dhIII repeat
19
chr1_4463_1338900
NC_003424.3
1338911
1338970
par2
20
chr3_6534_1960200_R
NC_003421.2
1960327
1960386
42968 2665 Kbytes .Supplementary data files not provided
Less...
More...