|
| Status |
Public on Jun 22, 2024 |
| Title |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [ChIP-seq] |
| Organisms |
Drosophila melanogaster; Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Analysis of chromatin marks, nascent transcription and mutational profiles at AID-target genes in human cell line and mouse
|
| |
|
| Overall design |
ChIP-seq for H3K27Ac, H3K4me3, H3K36me3 in Ramos cells with S2 spike-ins
|
| Web link |
https://doi.org/10.1101/2022.05.21.492925
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| |
|
| Contributor(s) |
Schoeberl UE, Fitz J, Froussios K, Valieris R, Makharova M, Ourailidis I, Bauer B, Neumann T, Wiedemann E, Mastrovito M, Steininger M, Cantoran Garcia A, Mouquet H, Tojal Da Silva I, Pavri R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 02, 2022 |
| Last update date |
Sep 29, 2024 |
| Contact name |
Maximilian Christian von der Linde |
| E-mail(s) |
maximilian.linde@imp.ac.at, max_vdl@outlook.com
|
| Phone |
+4368181646556
|
| Organization name |
Institute of Molecular Pathology
|
| Lab |
Pavri GRP
|
| Street address |
Campus-vienna-biocenter 1, IMP, Pavri GRP
|
| City |
Vienna |
| State/province |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (1) |
| GPL21246 |
Illumina HiSeq 2500 (Drosophila melanogaster; Homo sapiens) |
|
| Samples (12)
|
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| This SubSeries is part of SuperSeries: |
| GSE202042 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks |
|
| Relations |
| BioProject |
PRJNA834078 |
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