|
Status |
Public on Jun 22, 2024 |
Title |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks |
Organisms |
Drosophila melanogaster; Homo sapiens; Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing Other
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
Web link |
https://doi.org/10.1101/2022.05.21.492925
|
|
|
Citation missing |
Has this study been published? Please login to update or notify GEO. |
|
Submission date |
May 02, 2022 |
Last update date |
Sep 29, 2024 |
Contact name |
Maximilian Christian von der Linde |
E-mail(s) |
maximilian.linde@imp.ac.at, max_vdl@outlook.com
|
Phone |
+4368181646556
|
Organization name |
Institute of Molecular Pathology
|
Lab |
Pavri GRP
|
Street address |
Campus-vienna-biocenter 1, IMP, Pavri GRP
|
City |
Vienna |
State/province |
Vienna |
ZIP/Postal code |
1030 |
Country |
Austria |
|
|
Platforms (9)
|
GPL15520 |
Illumina MiSeq (Homo sapiens) |
GPL16417 |
Illumina MiSeq (Mus musculus) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
GPL21227 |
Illumina HiSeq 2500 (Drosophila melanogaster; Mus musculus) |
GPL21246 |
Illumina HiSeq 2500 (Drosophila melanogaster; Homo sapiens) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
GPL29805 |
Illumina NovaSeq 6000 (Drosophila melanogaster; Homo sapiens) |
GPL32226 |
NextSeq 550 (Drosophila melanogaster; Homo sapiens) |
|
Samples (78)
|
|
This SuperSeries is composed of the following SubSeries:
|
GSE202037 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [ATAC-seq] |
GSE202038 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [ChIP-seq] |
GSE202039 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [MutPE] |
GSE202040 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap] |
GSE202041 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-seq] |
|
Relations |
BioProject |
PRJNA834071 |