|
| Status |
Public on Jun 22, 2024 |
| Title |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap] |
| Organisms |
Drosophila melanogaster; Homo sapiens; Mus musculus |
| Experiment type |
Other
|
| Summary |
Analysis of chromatin marks, nascent transcription and mutational profiles at AID-target genes in human cell line and mouse
|
| |
|
| Overall design |
PRO-cap of human and murine cells in replicates
|
| Web link |
https://doi.org/10.1101/2022.05.21.492925
|
| |
|
| Contributor(s) |
Schoeberl UE, Fitz J, Froussios K, Valieris R, Makharova M, Ourailidis I, Bauer B, Neumann T, Wiedemann E, Mastrovito M, Steininger M, Cantoran Garcia A, Mouquet H, Tojal Da Silva I, Pavri R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 02, 2022 |
| Last update date |
Sep 29, 2024 |
| Contact name |
Maximilian Christian von der Linde |
| E-mail(s) |
maximilian.linde@imp.ac.at, max_vdl@outlook.com
|
| Phone |
+4368181646556
|
| Organization name |
Institute of Molecular Pathology
|
| Lab |
Pavri GRP
|
| Street address |
Campus-vienna-biocenter 1, IMP, Pavri GRP
|
| City |
Vienna |
| State/province |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (4)
|
| GPL21227 |
Illumina HiSeq 2500 (Drosophila melanogaster; Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL29805 |
Illumina NovaSeq 6000 (Drosophila melanogaster; Homo sapiens) |
| GPL32226 |
NextSeq 550 (Drosophila melanogaster; Homo sapiens) |
|
| Samples (11)
|
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| This SubSeries is part of SuperSeries: |
| GSE202042 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks |
|
| Relations |
| BioProject |
PRJNA834081 |
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