|
| Status |
Public on Jun 22, 2022 |
| Title |
RNA-seq and sRNA-seq analysis of rice lines of wild type and its mutant |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The study was conducted to characterize the mutant; identify the candidate gene for the mutant trait with the map-based cloning approach; investigate the segregation of target gene with the mutant characteristics, and examine the metabolic pathways of differentially expressed genes between WT and its mutant with comparative transcriptome analysis.
We then performed gene expression profiling analysis using data obtained from RNA-seq of wild type and its mutant.
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| |
|
| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for Nipponbare and its mutant.
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| |
|
| Contributor(s) |
Jin X, Tsago Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 10, 2022 |
| Last update date |
Jun 23, 2022 |
| Contact name |
Xiaoli Jin |
| E-mail(s) |
jinxl@zju.edu.cn
|
| Organization name |
Zhejiang University
|
| Street address |
Yuhangtang road 866
|
| City |
Hangzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
310058 |
| Country |
China |
| |
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| Platforms (1) |
| GPL13160 |
Illumina HiSeq 2000 (Oryza sativa) |
|
| Samples (5)
|
| GSM6229646 |
Sample_R19039495-NOVA20190905YMKD-2-MRNA192806HZ-NBR1 |
| GSM6229647 |
Sample_R19039495-NOVA20190905YMKD-2-MRNA192806HZ-NBR2 |
| GSM6229648 |
Sample_R19039495-NOVA20190905YMKD-2-MRNA192806HZ-NBR3 |
| GSM6229649 |
Sample_R19039495-NOVA20190905YMKD-2-MRNA192806HZ-sg2 |
| GSM6229650 |
Sample_R19039495-NOVA20190905YMKD-2-MRNA192806HZ-sg3 |
|
| Relations |
| BioProject |
PRJNA847770 |
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