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| Status |
Public on Jul 26, 2023 |
| Title |
High-light stress RNA-seq Arabidopsis thaliana |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
In order to elucidate the role of the Arabidopsis thaliana LLM-domain B-GATAs in response to high light intensities, a transcriptomic analysis of Col-0, a hexuple LLM-domain B-GATA mutant hex (gnc gnl gata15 gata16 gata17 gata17l) and GNLox under high-ligh stress conditions was performed.
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| Overall design |
Transcriptome comparison including three replicate measurements of three biological samples. Plants were subjected to three different conditions: six hours of high-light (HL) with 1200 µmol m-2 s-1 at 20-22°C (t6HL), six hours of mock treatment with 60-70 µmol m-2 s-1 at 20-22°C (t6GL), or at time point 0h (t0).
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| Contributor(s) |
Schröder PM, Schwechheimer C |
| Citation(s) |
37254806 |
| Submission date |
Jul 19, 2022 |
| Last update date |
Jul 27, 2023 |
| Contact name |
Peter Michael Schröder |
| E-mail(s) |
p.schroeder@tum.de
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| Organization name |
Technical University of Munich
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| Department |
School of Life Sciences
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| Lab |
Plant Systems Biology
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| Street address |
Emil-Ramann-Straße 8, Gebäude 4223
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| City |
Freising |
| State/province |
Bavaria |
| ZIP/Postal code |
85354 |
| Country |
Germany |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (27)
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| GSM6351302 |
hex t0, rep1 |
| GSM6351303 |
hex t0, rep2 |
| GSM6351304 |
hex t0, rep3 |
| GSM6351305 |
GNLox t0, rep1 |
| GSM6351306 |
GNLox t0, rep2 |
| GSM6351307 |
GNLox t0, rep3 |
| GSM6351308 |
Col-0 t6LL, rep1 |
| GSM6351309 |
Col-0 t6LL, rep2 |
| GSM6351310 |
Col-0 t6LL, rep3 |
| GSM6351311 |
hex t6LL, rep1 |
| GSM6351312 |
hex t6LL, rep2 |
| GSM6351313 |
hex t6LL, rep3 |
| GSM6351314 |
GNLox t6LL, rep1 |
| GSM6351315 |
GNLox t6LL, rep2 |
| GSM6351316 |
GNLox t6LL, rep3 |
| GSM6351317 |
Col-0 t6HL, rep1 |
| GSM6351318 |
Col-0 t6HL, rep2 |
| GSM6351319 |
Col-0 t6HL, rep3 |
| GSM6351320 |
hex t6HL, rep1 |
| GSM6351321 |
hex t6HL, rep2 |
| GSM6351322 |
hex t6HL, rep3 |
| GSM6351323 |
GNLox t6HL, rep1 |
| GSM6351324 |
GNLox t6HL, rep2 |
| GSM6351325 |
GNLox t6HL, rep3 |
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| This SubSeries is part of SuperSeries: |
| GSE208563 |
Conserved roles of B-GATAs in the regulation of photosynthesis and high-light stress response |
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| Relations |
| BioProject |
PRJNA860102 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE208555_RAW.tar |
37.1 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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