|
| Status |
Public on May 23, 2024 |
| Title |
Complementary Ribo-seq approaches refine the translatome and provide a small protein census in a bacterial pathogen |
| Organism |
Campylobacter jejuni |
| Experiment type |
Other
Expression profiling by high throughput sequencing
|
| Summary |
Three translatomic approaches were applied to the foodborne pathogen Campylobacter jejuni to identify translated open reading frames, start codons, and stop codons and reveal novel small proteins
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| |
|
| Overall design |
Total RNA-seq, ribosome profiling, TIS (translation initiation site) profiling (retapamulin and oncocin), and TTS (translation termination site) profiling (apidaecin 137; monosomes and disomes) using apidaecin in Campylobacter jejuni NCTC11168
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| |
|
| Contributor(s) |
Svensson SL, Gelhausen R, Sharma CM |
| Citation missing |
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| |
| Submission date |
Jul 21, 2022 |
| Last update date |
May 24, 2024 |
| Contact name |
Rick Gelhausen |
| E-mail(s) |
gelhausr@informatik.uni-freiburg.de
|
| Organization name |
Albert-Ludwigs-University Freiburg
|
| Department |
Department of Computer Science
|
| Lab |
Bioinformatics Group (AG Backofen)
|
| Street address |
Georges-Köhler-Allee 106
|
| City |
Freiburg |
| State/province |
Baden Württemberg |
| ZIP/Postal code |
79110 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL26884 |
Illumina NextSeq 500 (Campylobacter jejuni) |
|
| Samples (30)
|
|
| Relations |
| BioProject |
PRJNA860962 |
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