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| Status |
Public on Apr 27, 2023 |
| Title |
Uridylation is a genomic feature of encapsidated GFLV RNAs [GFLV] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To determine whether the single 3’ terminal uridine of the positive strand is encoded and whether this feature is shared by the negative strand, we attempted to map the 5’ and 3’ ends of the minus strand for both GFLV RNA1 and RNA2.
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| |
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| Overall design |
Using 3' and 5' RACE-seq method, we sequenced 3’ and 5' extremities of plus and minus strands of GFLV RNAs (GT isolate).
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| Contributor(s) |
Joly A, Zuber H, Gagliardi D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 30, 2022 |
| Last update date |
Apr 27, 2023 |
| Contact name |
Dominique Gagliardi |
| E-mail(s) |
dominique.gagliardi@ibmp-cnrs.unistra.fr
|
| Organization name |
CNRS
|
| Department |
IBMP
|
| Street address |
12, rue du General Zimmer
|
| City |
Strasbourg |
| ZIP/Postal code |
67084 |
| Country |
France |
| |
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| Platforms (1) |
| GPL17970 |
Illumina MiSeq (Arabidopsis thaliana) |
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| Samples (8)
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| This SubSeries is part of SuperSeries: |
| GSE212358 |
A global survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns |
|
| Relations |
| BioProject |
PRJNA875115 |
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