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| Status |
Public on Sep 11, 2022 |
| Title |
The role of H3K4me3 of low temperature memory in Arabidopsis [ChIP-Seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Plants experience a wide array of environmental stimuli to form a memory of adversity. Histone modification plays roles in plant stress memory, of which the mechanisms of H3K4me3 of low temperature memory in plants are poorly understood although H3K4me3 is a key histone modification. Combined with phenotypic analysis, chip-seq, and transcriptome analyses were performed to investigate the potential H3K4me3 contributions for different phases of recurring cold stresses Arabidopsis plants.
Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for H3K4me3 in different low temperature stress.
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| |
|
| Overall design |
Yuan, Song
|
| |
|
| Contributor(s) |
Song Y, Su Z, Zhang T, Su J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Sep 06, 2022 |
| Last update date |
Sep 14, 2022 |
| Contact name |
Zezhong Su |
| E-mail(s) |
suzzh19@lzu.edu.cn
|
| Organization name |
Lanzhou University
|
| Street address |
YuZhong
|
| City |
Lanzhou |
| ZIP/Postal code |
730100 |
| Country |
China |
| |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
|
| Samples (18)
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| GSM6552216 |
S0-1 control : Room temperature/or before stress IP |
| GSM6552217 |
S0-1 control : Room temperature/or before stress input |
| GSM6552218 |
S0-2 control : Room temperature/or before stress IP |
|
| Relations |
| BioProject |
PRJNA877270 |
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