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| Status |
Public on Apr 14, 2010 |
| Title |
Human skeletal muscle - type 2 diabetes and family history positive individuals - Mexican American |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Type 2 diabetes mellitus (DM) is characterized by insulin resistance and pancreatic beta-cell dysfunction. In high-risk subjects, the earliest detectable abnormality is insulin resistance in skeletal muscle. Impaired insulin-mediated signaling, gene expression, and glycogen synthesis, and accumulation of intramyocellular triglycerides have all been linked with insulin resistance, but no specific defect responsible for insulin resistance and DM has been identified in humans. To identify genes potentially important in the pathogenesis of DM, we analyzed gene expression in skeletal muscle from healthy metabolically characterized nondiabetic (family history negative and positive for DM) and diabetic Mexican-American subjects. We demonstrate that insulin resistance and DM associate with reduced expression of multiple nuclear respiratory factor-1 (NRF-1)-dependent genes encoding key enzymes in oxidative metabolism and mitochondrial function. While NRF-1 expression is decreased only in diabetic subjects, expression of both PPARg coactivator 1-alpha and -beta (PGC1-a/PPARGC1, and PGC1-b/PERC), coactivators of NRF-1 and PPARg-dependent transcription, is decreased in both diabetic subjects and family history positive nondiabetic subjects. Decreased PGC1 expression may be responsible for decreased expression of NRFdependent genes, leading to the metabolic disturbances characteristic of insulin resistance and DM.
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| Overall design |
Human muscle samples were obtained from five subjects with type 2 diabetes and ten subjects without diabetes, as well as 5 aliquots from a single subject without diabetes. The subjects without diabetes were further classified as family history positive (four subjects) or family history negative (six subjects).
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| Contributor(s) |
Patti ME, Butte AJ, Crunkhorn S, Cusi K, Berria R, Kashyap S, Miyazaki Y, Kohane I, Costello M, Saccone R, Landaker EJ, Goldfine AB, Mun E, DeFronzo R, Finlayson J, Kahn CR, Mandarino LJ |
| Citation(s) |
12832613 |
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| Submission date |
Apr 14, 2010 |
| Last update date |
Jul 08, 2016 |
| Contact name |
Mary Elizabeth Patti |
| E-mail(s) |
mary.elizabeth.patti@joslin.harvard.edu
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| Phone |
6177351966
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| Fax |
6177322593
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| Organization name |
Joslin Diabetes Center
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| Department |
Research Division
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| Street address |
1 Joslin Place
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (1) |
| GPL80 |
[Hu6800] Affymetrix Human Full Length HuGeneFL Array |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA126135 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE21340_RAW.tar |
39.8 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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