|
| Status |
Public on Jan 31, 2005 |
| Title |
ENCODE: RNAP transcription factor binding using Affymetrix genome tiling array (NCBIv34) |
| Project |
Pilot ENCODE
|
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Analysis of RNA Polymerase II transcription factor binding using Affymetrix genome tiling array.
Examined RNA Polymerase II RNAP chromatin immunoprecipitated (ChIP) DNA from HL-60 cells stimulated with retinoic acid for 0, 2, 8, or 32 hours.
Keywords: other
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| |
|
| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Sekinger E, Hirsch H, Yang A, Patel S, Sementchenko V, Kapranov P, Kampa D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63421 |
| |
| Submission date |
Jan 10, 2005 |
| Last update date |
Jun 28, 2012 |
| Contact name |
Thomas R Gingeras |
| E-mail(s) |
tom_gingeras@affymetrix.com
|
| Organization name |
Affymetrix, Inc.
|
| Street address |
3380 Central Expressway
|
| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL1789 |
Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 |
|
| Samples (4)
|
| GSM38708 |
RNAP ChIP from Retinoic Acid Stimulated HL-60 Cells, 0 hours (NCBIv34) |
| GSM38709 |
RNAP ChIP from Retinoic Acid Stimulated HL-60 Cells, 2 hours (NCBIv34) |
| GSM38710 |
RNAP ChIP from Retinoic Acid Stimulated HL-60 Cells, 8 hours (NCBIv34) |
| GSM38711 |
RNAP ChIP from Retinoic Acid Stimulated HL-60 Cells, 32 hours (NCBIv34) |
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