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| Status |
Public on Oct 04, 2022 |
| Title |
Plants grown in Kennedy Fixation Tubes (KFT) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
A simulated human-tended flight experiment was conducted by growing Arabidopsis thaliana plants on a phytagel matrix-encased coupon which was inserted into a Kennedy Fixation Tube (KFT) preloaded with RNAlater. RNAseq analysis conducted on these plants showed the ability to capture gravitational responses with high reproducibility. To mimick a suborbital flight profile, plants in KFTs were subjected to clinorotation and its transcriptome was compared to various quiescent controls.
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| Overall design |
Arabidopsis thaliana (Col-0) was grown in Kennedy Fixation Tubes
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| Contributor(s) |
Haveman NJ, Zhou M, Callaham J, Strickland HF, Paul A, Ferl RJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Sep 28, 2022 |
| Last update date |
Oct 04, 2022 |
| Contact name |
Robert Ferl |
| E-mail(s) |
ferllabuf@gmail.com
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| Organization name |
University of Florida
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| Department |
Horticultural Sciences
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| Lab |
UF Space Plants
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| Street address |
2550 Hull Rd
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| City |
Gainesville |
| State/province |
Florida |
| ZIP/Postal code |
32611 |
| Country |
USA |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (45)
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| GSM6604838 |
Quiescent 1, Roots, Replicate 1 |
| GSM6604839 |
Quiescent 1, Roots, Replicate 2 |
| GSM6604840 |
Quiescent 1, Roots, Replicate 3 |
| GSM6604841 |
Quiescent 2, Leaves, Replicate 1 |
| GSM6604842 |
Quiescent 2, Leaves, Replicate 2 |
| GSM6604843 |
Quiescent 2, Leaves, Replicate 3 |
| GSM6604844 |
Quiescent 2, Roots, Replicate 1 |
| GSM6604845 |
Quiescent 2, Roots, Replicate 2 |
| GSM6604846 |
Quiescent 2, Roots, Replicate 3 |
| GSM6604847 |
Quiescent 3, Leaves, Replicate 1 |
| GSM6604848 |
Quiescent 3, Leaves, Replicate 2 |
| GSM6604849 |
Quiescent 3, Leaves, Replicate 3 |
| GSM6604850 |
Quiescent 3, Roots, Replicate 1 |
| GSM6604851 |
Quiescent 3, Roots, Replicate 2 |
| GSM6604852 |
Quiescent 3, Roots, Replicate 3 |
| GSM6604853 |
Quiescent 4, Leaves, Replicate 1 |
| GSM6604854 |
Quiescent 4, Leaves, Replicate 2 |
| GSM6604855 |
Quiescent 4, Leaves, Replicate 3 |
| GSM6604856 |
Quiescent 4, Roots, Replicate 1 |
| GSM6604857 |
Quiescent 4, Roots, Replicate 2 |
| GSM6604858 |
Quiescent 4, Roots, Replicate 3 |
| GSM6604859 |
Clinostat (Q6), Leaves, Replicate 1 |
| GSM6604860 |
Clinostat (Q6), Leaves, Replicate 2 |
| GSM6604861 |
Clinostat (Q6), Leaves, Replicate 3 |
| GSM6604862 |
Clinostat (Q6), Roots, Replicate 1 |
| GSM6604863 |
Clinostat (Q6), Roots, Replicate 2 |
| GSM6604864 |
Clinostat (Q6), Roots, Replicate 3 |
| GSM6604865 |
Quiescent 1, Roots, KFT A, Replicate 1 |
| GSM6604866 |
Quiescent 1, Roots, KFT A, Replicate 2 |
| GSM6604867 |
Quiescent 1, Roots, KFT A, Replicate 3 |
| GSM6604868 |
Quiescent 1, Roots, KFT B, Replicate 1 |
| GSM6604869 |
Quiescent 1, Roots, KFT B, Replicate 2 |
| GSM6604870 |
Quiescent 1, Roots, KFT B, Replicate 3 |
| GSM6604871 |
Quiescent 1, Roots, KFT C, Replicate 1 |
| GSM6604872 |
Quiescent 1, Roots, KFT C, Replicate 2 |
| GSM6604873 |
Quiescent 1, Roots, KFT C, Replicate 3 |
| GSM6604874 |
Quiescent 1, Roots, KFT D, Replicate 1 |
| GSM6604875 |
Quiescent 1, Roots, KFT D, Replicate 2 |
| GSM6604876 |
Quiescent 1, Roots, KFT D, Replicate 3 |
| GSM6604877 |
Quiescent 1, Roots, Plate, Replicate 1 |
| GSM6604878 |
Quiescent 1, Roots, Plate, Replicate 2 |
| GSM6604879 |
Quiescent 1, Roots, Plate, Replicate 3 |
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| Relations |
| BioProject |
PRJNA885090 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE214377_Q123L_Q6L_RNAseq_results.xlsx |
3.9 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q123R_Q6R_RNAseq_results.xlsx |
4.1 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1A_Q1B_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1A_Q1C_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1A_Q1D_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1B_Q1C_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1B_Q1D_RNAseq_results.xlsx |
3.3 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1C_Q1D_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1L_Q2L_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1L_Q3L_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1L_Q4L_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1L_Q6L_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1P_Q1A_RNAseq_results.xlsx |
3.1 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1P_Q1B_RNAseq_results.xlsx |
3.2 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1P_Q1C_RNAseq_results.xlsx |
3.1 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1P_Q1D_RNAseq_results.xlsx |
3.1 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1R_Q2R_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1R_Q3R_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1R_Q4R_RNAseq_results.xlsx |
2.9 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1R_Q6R_RNAseq_results.xlsx |
3.1 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1_3L_Q6L_RNAseq_results.xlsx |
3.5 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q1_3R_Q6R_RNAseq_results.xlsx |
3.6 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q3L_Q6L_ratio_RNAseq_results.xlsx |
3.0 Mb |
(ftp)(http) |
XLSX |
| GSE214377_Q3R_Q6R_ratio_RNAseq_results.xlsx |
3.1 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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