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Series GSE2146

Query DataSets for GSE2146

Status

Public on Apr 01, 2005

Title

CT01 vs wild-type at 3% O2

Platform organism

Cereibacter sphaeroides 2.4.1

Sample organism

Cereibacter sphaeroides

Experiment type

Expression profiling by array

Summary

Comparison of wild-type (2.4.1) and CT01 (contains an omega Spr/Smr insertion in RSP4157) gene expression; growth condition is (3% O2 + 96%N2 + 1%CO2) semi-aerobic growth in the dark. Manuscript in preparation.

The below normalized data was generated using GeneSpring software with the following settings:

A data:
Data Transformation: set all values less than 0.01 to 0.01
Per Chip: normalize to 50th percentile, and then
Per Gene: normalize to median

B data:
Data Transformation: set all values less than 0.01 to 0.01
Per Chip: normalize to 50th percentile
Values from independent replicates were averaged
Keywords = Rhodobacter sphaeroides
Keywords = photosynthesis
Keywords = semi-aerobic
Keywords = purple bacteria
Keywords: other

Contributor(s)

Tavano CL, Donohue TJ

Citation(s)

16030219

Submission date

Jan 11, 2005

Last update date

Apr 26, 2014

Contact name

Timothy J Donohue

E-mail(s)

tdonohue@bact.wisc.edu

Phone

608-265-8465

Organization name

University of Wisconsin - Madison

Department

Bacteriology

Lab

Timothy Donohue

Street address

1552 University Avenue

City

Madison

State/province

ZIP/Postal code

53726

Country

USA

Platforms (1)

GPL162

[uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip

Samples (5)

More...

GSM38780	2.4.1-A1
GSM38781	2.4.1-B2
GSM38782	CT01-A2

Relations

BioProject

PRJNA91401

Normalized data header descriptions
Systematic Name
A - 2.4.1
A - CT01
B - 2.4.1
B - CT01

Data table
Systematic Name	A - 2.4.1	A - CT01	B - 2.4.1	B - CT01
2.4.3	0.619	1.08	0.0903	0.157
2.4.3_01	NO DATA	NO DATA	NO DATA	NO DATA
2.4.3_02	NO DATA	NO DATA	NO DATA	NO DATA
AFFX-BioB-3	1.42	0.678	0.0253	0.0121
AFFX-BioB-5	1.207	1.23	0.0986	0.1
AFFX-BioB-M	0.743	1.053	0.0693	0.0982
AFFX-BioC-3	1.268	0.969	0.0226	0.0173
AFFX-BioC-5	1.44	0.876	0.0257	0.0156
AFFX-BioDn-3	0.662	1.354	0.0184	0.0377
AFFX-BioDn-5	0.561	1.57	0.0139	0.0389
AFFX-CreX-3	0.598	1.514	0.0156	0.0394
AFFX-CreX-5	0.51	0.978	0.0186	0.0337
AFFX-DapX-3	0.345	0.701	0.01*	0.0125
AFFX-DapX-5	0.0955	0.214	0.01*	0.01*
AFFX-DapX-M	0.0818	0.0874	0.01*	0.01*
AFFX-LysX-3	0.136	0.128	0.01*	0.01*
AFFX-LysX-5	0.0349	0.0377	0.01*	0.01*
AFFX-LysX-M	0.387	0.664	0.01*	0.0134
AFFX-PheX-3	0.577	0.416	0.0117	0.01*
AFFX-PheX-5	0.227	0.45	0.01*	0.0125

Total number of rows: 5003

Table truncated, full table size 159 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE2146_RAW.tar	7.6 Mb	(http)(custom)	TAR (of CEL, EXP, RPT)