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Status
Public on Mar 11, 2003
Title
[uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Cereibacter sphaeroides 2.4.1
Description
4242 candidate protein-encoding gene models
Web link
http://genome.ornl.gov/microbial/rsph/ Submission date
May 10, 2002
Last update date
Apr 25, 2014
Contact name
Mark Gomelsky
E-mail(s)
gomelsky@uwyo.edu Phone
307-766-3522
Organization name
University of Wyoming
Department
Molecular Biology
Lab
Gomelsky
Street address
City
Laramie
State/province
WY
ZIP/Postal code
82071
Country
USA
Samples (232)
GSM1670 , GSM1671 , GSM1672 , GSM1673 , GSM2416 , GSM2417
GSM2418 ,
GSM2419 ,
GSM2420 ,
GSM2421 ,
GSM2422 ,
GSM2423 ,
GSM2424 ,
GSM2425 ,
GSM2426 ,
GSM2427 ,
GSM2428 ,
GSM2429 ,
GSM2430 ,
GSM2450 ,
GSM3030 ,
GSM3031 ,
GSM3032 ,
GSM3258 ,
GSM3260 ,
GSM3262 ,
GSM3272 ,
GSM3273 ,
GSM3274 ,
GSM8107 ,
GSM8108 ,
GSM8109 ,
GSM25295 ,
GSM25296 ,
GSM25297 ,
GSM25298 ,
GSM25299 ,
GSM25300 ,
GSM25301 ,
GSM25302 ,
GSM25303 ,
GSM26242 ,
GSM26243 ,
GSM26244 ,
GSM26245 ,
GSM26260 ,
GSM26262 ,
GSM26263 ,
GSM26265 ,
GSM26266 ,
GSM27348 ,
GSM27349 ,
GSM27350 ,
GSM27351 ,
GSM27352 ,
GSM27353 ,
GSM38773 ,
GSM38774 ,
GSM38775 ,
GSM38776 ,
GSM38777 ,
GSM38778 ,
GSM38779 ,
GSM38780 ,
GSM38781 ,
GSM38782 ,
GSM38783 ,
GSM38810 ,
GSM40560 ,
GSM61901 ,
GSM61902 ,
GSM61903 ,
GSM61904 ,
GSM61914 ,
GSM61915 ,
GSM61916 ,
GSM61917 ,
GSM61918 ,
GSM61919 ,
GSM61920 ,
GSM61921 ,
GSM61922 ,
GSM61923 ,
GSM61924 ,
GSM161565 ,
GSM200619 ,
GSM200628 ,
GSM200632 ,
GSM200637 ,
GSM200641 ,
GSM200645 ,
GSM200646 ,
GSM200647 ,
GSM200648 ,
GSM241428 ,
GSM241429 ,
GSM241430 ,
GSM308084 ,
GSM308085 ,
GSM308086 ,
GSM308087 ,
GSM308088 ,
GSM308089 ,
GSM308090 ,
GSM308091 ,
GSM308092 ,
GSM308093 ,
GSM308094 ,
GSM308095 ,
GSM308096 ,
GSM308097 ,
GSM308098 ,
GSM308099 ,
GSM308100 ,
GSM308101 ,
GSM308102 ,
GSM308103 ,
GSM308104 ,
GSM308105 ,
GSM308106 ,
GSM308107 ,
GSM509585 ,
GSM509586 ,
GSM509587 ,
GSM509588 ,
GSM509589 ,
GSM509590 ,
GSM548557 ,
GSM548558 ,
GSM548559 ,
GSM548560 ,
GSM548561 ,
GSM548562 ,
GSM548563 ,
GSM548564 ,
GSM548565 ,
GSM548566 ,
GSM548567 ,
GSM738839 ,
GSM738840 ,
GSM738841 ,
GSM738842 ,
GSM738843 ,
GSM738844 ,
GSM738845 ,
GSM738846 ,
GSM738847 ,
GSM738848 ,
GSM738849 ,
GSM738850 ,
GSM738851 ,
GSM738852 ,
GSM738853 ,
GSM738854 ,
GSM738855 ,
GSM738856 ,
GSM832034 ,
GSM832035 ,
GSM832036 ,
GSM832037 ,
GSM832038 ,
GSM832039 ,
GSM832040 ,
GSM832041 ,
GSM832042 ,
GSM832043 ,
GSM832044 ,
GSM832045 ,
GSM978042 ,
GSM978043 ,
GSM978044 ,
GSM978045 ,
GSM978046 ,
GSM978047 ,
GSM978048 ,
GSM978049 ,
GSM978050 ,
GSM978051 ,
GSM978052 ,
GSM978053 ,
GSM978054 ,
GSM978055 ,
GSM978056 ,
GSM1145747 ,
GSM1145748 ,
GSM1145749 ,
GSM1145750 ,
GSM1145751 ,
GSM1145752 ,
GSM1145753 ,
GSM1145754 ,
GSM1145755 ,
GSM1413829 ,
GSM1413830 ,
GSM1413831 ,
GSM1413832 ,
GSM1413833 ,
GSM1413834 ,
GSM1413835 ,
GSM1413836 ,
GSM1413837 ,
GSM1413838 ,
GSM1413839 ,
GSM1413840 ,
GSM1413841 ,
GSM1413842 ,
GSM1413843 ,
GSM1413844 ,
GSM1413845 ,
GSM1413846 ,
GSM1413847 ,
GSM1413848 ,
GSM1413849 ,
GSM1413850 ,
GSM1413851 ,
GSM1413852 ,
GSM1413853 ,
GSM1413854 ,
GSM1413855 ,
GSM1413856 ,
GSM1413857 ,
GSM1413858 ,
GSM1413859 ,
GSM1550069 ,
GSM1550070 ,
GSM1550071 ,
GSM1550072 ,
GSM1550073 ,
GSM1550074 ,
GSM1550075 ,
GSM1550076 ,
GSM1550077 Series (26)
GSE139 Effect of varying illumination
GSE532 4 growth modes - RNA from Laramie & Houston RNA
GSE1480 Responses of the Rhodobacter sphaeroides Transcriptome to Blue Light
GSE1515 PpsR regulon in Rhodobacter sphaeroides
GSE2145 30% O2 vs PS 10W/m2
GSE2146 CT01 vs wild-type at 3% O2
GSE2150 Rhodobacter sphaeroides respiration and photosynthesis
GSE2219 Wild type versus Delta ChrR
GSE2829 Regulation of hydrogen peroxide-dependent gene expression in Rhodobacter sphaeroides: Regulatory functions of OxyR
GSE7004 Oxygen-dependent transcriptome profiling in R.sphaeroides 2.4.1 in the dark
GSE8082 Rhodobacter sphaeroides salt stress response
GSE9534 Digging deeper into the PpsR regulon of Rhodobacter sphaeroides
GSE12269 Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in R. sphaeroides
GSE20337 Role of the global transcriptional regulator PrrA in R. sphaeroides 2.4.1
GSE22063 Transcriptional responses of Rhaodobacter sphaeroides to Tungsten
GSE29811 Expression data from H2-producing Rhodobacter sphaeroides cultures fed different organic substrates
GSE33641 Transcriptome response to nitrosative stress in Rhodobacter sphaeroides 2.4.1
GSE39712 RpoHI and RpoHII regulons in Rhodobacter sphaeroides 2.4.1 from gene expression profiling
GSE39806 RpoHI and RpoHII regulons in Rhodobacter sphaeroides 2.4.1
GSE47149 Mutations in GlnA, NifA and NifK enabling photosynthetic growth of Rhodobacter sphaeroides in the absence of CO2 fixation
GSE58553 An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks [Affymetrix]
GSE58554 Global analysis of photosynthesis transcriptional regulatory networks [Expression profiling]
GSE58658 An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks
GSE58717 Global analysis of photosynthesis transcriptional regulatory networks
GSE63448 Microarray analysis of Rhodobacter sphaeroides CceR and AkgR deletion strains
GSE63450 CceR and AkgR regulate of central carbon and energy metabolism in α-Proteobacteria
Data table header descriptions ID Probe Set Name as appeared on chip
GB_ACC GenBank accession number
ORF SPOT_ID Gene_name current annotation by ORNL
Data table ID Probe Set Name GB_ACC ORF SPOT_ID Gene_name 1
2.4.3_01_at
--not specified
not specified
2
2.4.3_02_at
--not specified
not specified
3
AFFX-BioB-3_at
J04423 control
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
4
AFFX-BioB-5_at
J04423 control
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
5
AFFX-BioB-M_at
J04423 control
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
6
AFFX-BioC-3_at
J04423 control
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
7
AFFX-BioC-5_at
J04423 control
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
8
AFFX-BioDn-3_at
J04423 control
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
9
AFFX-BioDn-5_at
J04423 control
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
10
AFFX-CreX-3_at
X03453 control
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
11
AFFX-CreX-5_at
X03453 control
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
12
AFFX-DapX-3_at
L38424 control
L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
13
AFFX-DapX-5_at
L38424 control
L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
14
AFFX-DapX-M_at
L38424 control
L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
15
AFFX-LysX-3_at
X17013 control
X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
16
AFFX-LysX-5_at
X17013 control
X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
17
AFFX-LysX-M_at
X17013 control
X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
18
AFFX-PheX-3_at
M24537 control
M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
19
AFFX-PheX-5_at
M24537 control
M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
20
AFFX-PheX-M_at
M24537 control
M24537B subtilis pheB, pheA genes corresponding to nucleotides 2017-3334 of M24537 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
5355 1458 Kbytes .Supplementary file Size Download File type/resource GPL162_uwyRhodo1a.CDF.gz
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