|
| Status |
Public on Oct 14, 2022 |
| Title |
Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA792960 |
| Submission date |
Oct 13, 2022 |
| Last update date |
Aug 11, 2023 |
| Contact name |
Yue Pan |
| E-mail(s) |
panyue@shanghaitech.edu.cn
|
| Organization name |
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
|
| Department |
Center for Excellence in Molecular Cell Science, CAS
|
| Street address |
320 Yue Yang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platforms (2) |
| GPL26171 |
HiSeq X Ten (Saccharomyces cerevisiae) |
| GPL27812 |
Illumina NovaSeq 6000 (Saccharomyces cerevisiae) |
|
| Samples (18)
|
| GSM6139040 |
ATAC-Seq of wide type cell: budding yeast by4741 repeat 1 |
| GSM6139041 |
ATAC-Seq of wide type cell: budding yeast by4741 repeat 2 |
| GSM6139042 |
ATAC-Seq of SWC4 deletion cell: budding yeast by4741 repeat 1 |
| GSM6139043 |
ATAC-Seq of SWC4 deletion cell: budding yeast by4741 repeat 2 |
| GSM6634628 |
Saccharomyces cerevisiae-wild-type (Swc4-13myc)-repeat1 |
| GSM6634629 |
Saccharomyces cerevisiae-wild-type (Swc4-13myc)-repeat2 |
| GSM6634630 |
Saccharomyces cerevisiae-yaf9d (Swc4-13myc)-repeat1 |
| GSM6634631 |
Saccharomyces cerevisiae-yaf9d (Swc4-13myc)-repeat2 |
| GSM6634632 |
Saccharomyces cerevisiae-eaf1d (Swc4-13myc)-repeat1 |
| GSM6634633 |
Saccharomyces cerevisiae-eaf1d (Swc4-13myc)-repeat2 |
| GSM6634634 |
Saccharomyces cerevisiae-swr1d (Swc4-13myc)-repeat1 |
| GSM6634635 |
Saccharomyces cerevisiae-swr1d (Swc4-13myc)-repeat2 |
| GSM6634636 |
Saccharomyces cerevisiae-wild-type (no tag)-repeat1 |
| GSM6634637 |
Saccharomyces cerevisiae-wild-type (no tag)-repeat2 |
| GSM7421446 |
Saccharomyces cerevisiae-wild-type (Arp4-3Flag)-repeat1 |
| GSM7421447 |
Saccharomyces cerevisiae-wild-type (Arp4-3Flag)-repeat2 |
| GSM7421448 |
Saccharomyces cerevisiae-wild-type (no tag)-repeat1 |
| GSM7421449 |
Saccharomyces cerevisiae-wild-type (no tag)-repeat2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE202946 |
Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability [ATAC-seq] |
| GSE215374 |
Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability [ChIP-Seq] |
| GSE233269 |
Swc4 protects nucleosome-free rDNA, tDNA and telomere loci to inhibit genome instability |
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