GEO Accession viewer

GSE148213	Transcriptome reprogramming of key transcription factor deletion strains of Saccharomyces cerevisiae compared with the wild type strain grown at normal temperature by RNA-Seq
GSE150737	S-phase independent silencing establishment in Saccharomyces cerevisiae
GSE150790	Ribosome-quality control antagonizes the activation of integrated-stress response on colliding ribosomes
GSE152916	Measuring the dependence of the yeast heat shock response on intracellular pH and translation during stress
GSE154212	Molecular Functions of Conserved Developmentally-Regulated GTP-Binding Protein Drg1 in Translation
GSE154226	DEtail-seq profiled meiotic DSBs in Saccharomyces cerevisiae
GSE155143	FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner [MNase-ChIP-Seq]
GSE155144	FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner
GSE157155	Chromosome localization of cohesin oligomers in mid-M arrested yeast cells
GSE157402	Nucleosome exchange in budding yeast
GSE158180	Ash1 and Tup1 Dependent Repression of the Saccharomyces cerevisiae HO promoter Requires Activator-Dependent Nucleosome Eviction
GSE158318	A barcoded genome-scale library of inducible alleles reveals principles of synthetic gene control [Seq]
GSE158319	A barcoded genome-scale library of inducible alleles reveals principles of synthetic gene control
GSE158336	A compendium of chromatin contact maps reflecting regulation by chromatin remodelers in budding yeast
GSE160162	Hydrogen sulfide treatment at the late growth stage of Saccharomyces cerevisiae extends chronological lifespan
GSE160256	Base editing of general transcription factor Spt15 to enhance yeast stress tolerance
GSE160709	The SR-like protein Npl3 transfers mRNP components from the transcription site onto the mRNA
GSE160861	Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signaling
GSE162987	Impaired phosphatidylethanolamine metabolism activates a reversible stress response that detects and resolves mutant mitochondrial precursors
GSE164229	Transcriptome Analysis Reveals a Promotion of Carotenoid Production by Copper Ions in Recombinant Saccharomyces cerevisiae
GSE164344	Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth ssing sterol requirements enables anaerobic growth of the thermotolerant yeast Kluyveromyces marxianus
GSE164470	Identification of a novel metabolic engineering target for carotenoid production in Saccharomyces cerevisiae via ethanol-induced adaptive laboratory evolution
GSE167499	Hda1C restricts burst frequency to limit divergent non-coding transcription
GSE167842	Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size
GSE168182	Dynamics of synthetic yeast chromosome evolution shaped by hierarchical chromatin structures
GSE168827	SPT5 stabilizes promoter-proximal RNA polymerase II prior to release into gene bodies
GSE169271	Localized phosphorylation of RNA Polymerase II by G1 cyclin-Cdk promotes cell cycle entry
GSE171329	Decoupling of degradation from deadenylation reshapes poly(A) tail length in yeast meiosis
GSE173720	Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor [RNA-Seq]
GSE173721	Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor [ChIP-Seq]
GSE173722	Genetic analysis argues for a coactivator function for the Saccharomyces cerevisiae Tup1 corepressor
GSE174268	Inducible meiotic cDNA libraries for genome-wide studies of gene isoforms
GSE174427	The Spt6-tSH2 domain coordinates functional transitions of the RNA Polymerase II CTD during initiation and elongation.
GSE176169	Role of eEF2 diphthamide modification in translational fidelity
GSE176575	Disruption of the histone H3 cupric reductase activity prevents global transcriptional rewiring when YFH1 is diminished
GSE177033	The ZMM protein Zip4 directly couples meiotic crossover formation to synaptonemal complex assembly
GSE178160	Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes [RNA-seq]
GSE178161	Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes
GSE179430	WGD paralog evolution
GSE180165	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress [ChIP-seq]
GSE180167	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress
GSE180221	Post-transcriptional control of mating-type gene expression during gametogenesis in Saccharomyces cerevisiae
GSE181199	NPC transcriptome disection
GSE181620	Reciprocal regulation of phosphatidylcholine synthesis and H3K36 methylation programs metabolic adaptation
GSE182131	Transcriptomic analysis of gene expression in diosgenin producing yeast strains
GSE182342	Adaptive evolution under modest thermal stress improves the thermotolerance and ethanol fermentability of Saccharomyces cerevisiae
GSE183490	Exogenous artificial DNA forms chromatin structure with active transcription in yeast [RNA-seq]
GSE183491	Exogenous artificial DNA forms chromatin structure with active transcription in yeast [ChIP-seq]
GSE183492	Exogenous artificial DNA forms chromatin structure with active transcription in yeast
GSE184955	Spt6-tSH2 domain and Rpb1
GSE185290	Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels
GSE186126	RNAseq of engineered S. cerevisiae strains for isobutanol production
GSE186378	Model-driven design of synthetic N-terminal coding sequences for fine-tuning gene expression in yeast and bacteria
GSE186490	Dephosphorylation of the pre-initiation complex during S-phase is critical for origin firing dynamics
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4
GSE189404	Distinct ribosome states trigger diverse mRNA quality control pathways
GSE189831	The interaction between the Spt6-tSH2 domain and Rpb1 affects multiple functions of RNA Polymerase II [MNase-seq]
GSE190065	Genome-wide regulations of the preinitiation complex formation and elongating RNA polymerase II by an E3 ubiquitin ligase, San1.
GSE191212	Engineering class-B vitamin biosynthesis in Saccharomyces cerevisiae
GSE192479	Genome-Scale Patterns in The Loss of Heterozygosity Incidence in Saccharomyces cerevisiae
GSE193025	Ribosome profiling reveals the role of yeast RNA-binding proteins Cth1 and Cth2 in translational regulation
GSE193044	Histone turnover during DNA replication
GSE193198	Reciprocal regulation of phosphatidylcholine synthesis and H3K36 methylation programs metabolic adaptation II
GSE193560	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast [Polysome]
GSE193561	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast.
GSE193598	rDNA Array Length is a Major Determinant of Replicative Lifespan in Budding Yeast - ATACseq
GSE193599	rDNA Array Length is a Major Determinant of Replicative Lifespan in Budding Yeast - RNAseq
GSE193600	rDNA Array Length is a Major Determinant of Replicative Lifespan in Budding Yeast.
GSE195880	Distinct silencer states determine epigenetic states of heterochromatin
GSE197174	Intron-mediated induction of phenotypic heterogeneity
GSE199728	Rpd3 regulates single-copy origins independently of the rDNA array by opposing origin stimulation by Fkh1 [ChIP-seq]
GSE200349	Rpd3 regulates single-copy origins independently of the rDNA array by opposing origin stimulation by Fkh1 [BrdU-IP-seq]
GSE200351	Rpd3 regulates single-copy origins independently of the rDNA array by opposing origin stimulation by Fkh1
GSE201366	Negative supcoils pattern meiotic crossovers
GSE202946	Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability [ATAC-seq]
GSE203073	Insights into promoter chromatin remodeling from the structure of ISW1a complex bound to the dinucleosome
GSE203276	Cytoplasmic lncRNAs accumulate upon ANS-induced translation elongation inhibition
GSE203277	Cytoplasmic lncRNAs accumulate upon CHX-induced translation elongation inhibition
GSE203278	Translational landscape of Xrn1-sensitive lncRNAs in yeast
GSE203283	Pervasive translation of Xrn1-sensitive unstable long non-coding RNAs in yeast
GSE205227	Phenotypic selection during laboratory evolution of yeast populations leads to a genome-wide sustainable chromatin compaction shift
GSE205228	Sis2 regulates yeast replicative lifespan in a dose-dependent manner
GSE207278	Differential requirements for Gcn5 and NuA4 HAT activities in the starvation-induced versus basal transcriptomes
GSE209631	Complementies strategies encoded by DBD and IDRs direct TF binding
GSE209726	Sequencing of yeast mutants
GSE209857	RNA structure landscape of S. cerevisiae introns
GSE210198	A cap 0-dependent mRNA capture method to analyze the yeast transcriptome
GSE211918	Slowest possible replicative life at frigid temperatures for yeast
GSE212466	The molecular grammar of protein disorder guiding genomic binding specificity
GSE212790	Sequencing of yeast mutants with or without phosphate depletion
GSE212974	Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control
GSE213498	The effect of accumulation of a Cit1 mutant that lacks presequence in Saccharomyces cerevisiae
GSE215190	Dbf4 Zn-finger motif is specifically required for stimulation of Ctf19-activated origins in S. cerevisiae
GSE215375	Swc4 protects nucleosome free chromatin of telomeres, tRNA genes and rDNA loci to inhibit genome instability
GSE215911	Discovering specificity determinants in Gln3 and their regulation
GSE217944	Extreme positive epistasis for fitness in monosomic yeast strains - part 1
GSE218602	Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling
GSE220465	PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae
GSE220578	Decapping factor Dcp2 controls mRNA abundance and translation to adjust metabolism and filamentation to nutrient availability II
GSE221024	Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [ChIP-seq]
GSE221025	Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [RNA-seq]
GSE221026	Gcn5- and Bre1-mediated Set2 degradation promotes chronological aging of Saccharomyces cerevisiae
GSE221451	Yeast meiotic transcriptional profile
GSE221570	Transcriptional Response of Multi-stress Tolerant Saccharomyces cerevisiae to Sequential Stress
GSE222268	TF binding profiles acquired using ChEC-seq in various TF co-deletion strains
GSE222684	Yeast meiotic transcriptional profile [Kfc1p mutant]
GSE223726	Regulators of histone exchange
GSE224774	mRNA decapping activators Pat1 and Dhh1 regulate transcript abundance and translation to tune cellular responses to nutrient availability
GSE224833	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [RNA-Seq]
GSE224835	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [m6A-Seq]
GSE224836	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles
GSE225473	Alleviating classB vitamin requirement for fast growth of Saccharomyces cerevisiae in oxic conditions
GSE225582	The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation
GSE226082	The ubiquitin conjugase Rad6 mediates ribosome pausing during oxidative stress
GSE226769	The Transcriptional Regulator Ume6 is a Major Driver of Gene Expression during Gametogenesis in Budding Yeast
GSE226779	Exonuclease Xrn1 regulates TORC1 signaling in response to SAM availability
GSE226971	RNAseq analysis of mutants in coding and non-coding transcription of phosphate genes in the yeast Saccharomyces cerevisiae.
GSE227356	Pbp1 associates with Puf3 and promotes translation of its target mRNAs involved in mitochondrial biogenesis
GSE227757	Context dependent function of transcriptional regulator Rap1 in gene silencing and activation [ChIPseq I]
GSE227759	Context dependent function of transcriptional regulator Rap1 in gene silencing and activation [ChIP-seq II]
GSE227760	Context dependent function of transcriptional regulator Rap1 in gene silencing and activation [ChIP-seq III]
GSE227763	Context dependent function of transcriptional regulator Rap1 in gene silencing and activation
GSE229798	Regulation of transcriptional interference by the Swi/Snf complex [ChIP-seq]
GSE229800	Regulation of transcriptional interference by the Swi/Snf complex [Mnase-seq]
GSE229803	Regulation of transcriptional interference by the Swi/Snf complex [TL-seq]
GSE229804	Regulation of transcriptional interference by the Swi/Snf complex [RNA-seq]
GSE229952	Regulation of transcriptional interference by the Swi/Snf complex
GSE230475	Broadly-applicable control approaches improve accuracy of ChIP-seq data
GSE231488	Surveillance of 3’ mRNA cleavage during transcription termination requires CF IB/Hrp1
GSE231756	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E [aro10_screen]
GSE231757	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E [pcl5_screen]
GSE231758	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E [RNA-Seq]
GSE231759	Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E
GSE231809	Protein localisation during chromatin regulator depletion
GSE231810	Regulators of histone exchange and protein localisation during chromatin regulator depletion
GSE231937	Transcriptional response of Saccharomyces cerevisiae to lactic acid enantiomers
GSE232311	Genetic inactivation of essential HSF1 reveals an isolated transcriptional stress response selectively induced by protein misfolding
GSE232450	Dissecting the sequence and structural determinants guiding m6A deposition and evolution via inter- and intra-species hybrids
GSE232681	Investigation of Rap1 binding occupancy in global H3-depletion condition [H3MNase_ChIPseq]
GSE232682	Investigation of Rap1 binding occupancy in global H3-depletion condition [Rap1_ChIPseq]
GSE232684	Investigation of Rap1 binding occupancy in global H3-depletion condition [RNA-seq]
GSE232685	Investigation of Rap1 binding occupancy in global H3-depletion condition
GSE232893	Effect of global translation initiation inhibition associated to glucose starvation on cytoplasmic lncRNAs levels
GSE233269	Swc4 protects nucleosome-free rDNA, tDNA and telomere loci to inhibit genome instability
GSE233549	Dbf4-dependent kinase promotes cell-cycle controlled resection of DNA double strand breaks and repair by homologous recombination
GSE233555	Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts
GSE234023	mRNA during Spt6,Spt16 and Rtt106 depletion
GSE234215	High Throughput Plant Activation Domain Identification and Mapping
GSE234406	Elongation rate of RNA polymerase II affects pausing patterns across the 3’ UTR
GSE234432	Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors
GSE234433	Activation domains and Coactivator direct genomic localization of fused DNA binding domains, defining the subset of activated promoters
GSE234455	Massively Parallel Binding Assay (MPBA) reveals limited transcription factor cooperation, challenging models of specificity
GSE234499	An adaptive biomolecular condensation response is conserved across environmentally divergent species
GSE235209	Deciphering mRNA binding determinants of RBPs
GSE235239	Gene expression of subpopulations arising from a nitrogen down-shift with proline as a nitrogen source in S. cerevisiae
GSE235553	Xrn1-sensitive lncRNAs are globally insensitive to the cytoplasmic helicases Ecm32, Ski2, Slh1, Dbp1 and Dhh1
GSE235554	The RNA helicases Dbp2 and Mtr4 regulate the expression of Xrn1-sensitive long non-coding RNAs in yeast
GSE235627	Polysome propensity and tunable thresholds in coding sequence length enable differential mRNA stability
GSE236913	Cell cycle-linked vacuolar pH dynamics regulate amino acid homeostasis and cell growth
GSE238127	All you can eat yeast: substitution of major hexose transporters by AtSWEET7 in Saccharomyces cerevisiae enables simultaneous utilization of multiple sugars
GSE239882	Intrinsically disordered regions of transcription factor encode multiple functions using interwoven sequence grammars (ChEC-seq)
GSE239883	Intrinsically disordered regions of transcription factor encode multiple functions using interwoven sequence grammars (RNA-Seq)
GSE239884	Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars
GSE240052	Antifungal mechanism of volatile compounds emitted by Actinomycetota Paenarthrobacter ureafaciens from a disease-suppressive soil on Saccharomyces cerevisiae.
GSE240192	Structure of the ISW1a complex bound to the dinucleosome
GSE242403	Distinct functional constraints driving conservation of the cofilin N-terminal regulatory tail
GSE242556	Simultaneous estimation of gene regulatory network structure and RNA kinetics from single cell gene expression
GSE243833	The Role of Histone H3 Leucine 126 as the Axial Copper Ligand
GSE244093	Transcriptome-wide analysis of the function of Ded1 in translation preinitiation complex assembly in a reconstituted in vitro system
GSE245005	The Role of Hexokinases in Epigenetic Regulation: Insights from Altered Expression of Hexokinases and Chromatin Stability
GSE245485	Deep mutational scanning of the interaction of JUN's leucine zipper domain and other human bZIPs in different experimental conditions
GSE246093	Post-transcriptional mechanisms modulate the consequences of adaptive copy number variation (RNA)
GSE246094	Post-transcriptional mechanisms modulate the consequences of adaptive copy number variation (RPF)
GSE246163	The Ribosome Assembly Factor Reh1 is Released from the Polypeptide Exit Tunnel in the Pioneer Round of Translation
GSE246423	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment.
GSE246619	Nucleosome intermediate preference of SMARCAD1 chromatin remodeler, and the structural insights
GSE246711	The yeast AMP-activated protein kinase Snf1p phosphorylates the inositol polyphosphate kinase Kcs1p
GSE246901	Negative supercoil senses temperature to modulate meiotic crossovers and chromosomes
GSE246957	Comparative analyses of disease-linked missense mutations in the RNA exosome modeled in budding yeast reveal distinct functional consequences in translation
GSE247147	Systematic identification of transcriptional activation domains from non-transcription factor proteins in plants and yeast
GSE247492	The cullin Rtt101 promotes ubiquitin-dependent DNA-Protein Crosslink repair across the cell cycle
GSE248281	Cohesin chromatin loop formation by an extrinsic motor (Micro-C)
GSE248282	Cohesin chromatin loop formation by an extrinsic motor
GSE248550	Separating the impact of flocculation upon global gene transcription in a yeast Cyc8 mutant
GSE249817	Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences.
GSE252348	Selected humanization of yeast U1 snRNP leads to global suppression of pre-mRNA splicing and mitochondrial dysfunction in the budding yeast
GSE253055	Auto-sumoylation of the Ubc9 E2 SUMO-conjugating Enzyme Extends Cellular Lifespan
GSE254215	Centromere Pairing Enables Correct Segregation of Meiotic Chromosomes
GSE254759	Growth regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes [ChIP-seq]
GSE254760	Growth regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes [RNA-seq]
GSE254761	Growth regulated co-occupancy of Mediator and Lsm3 at intronic ribosomal protein genes
GSE256156	Effects of formalin-fixation on FAIRE-Seq and MNase-Seq signatures in yeast
GSE256160	Effects of formalin-fixation on FAIRE-Seq and MNase-Seq signatures in yeast (RNA-Seq)
GSE259240	wt and sua7-1 nascent mRNA profiling in relation to termination of transcription
GSE261087	Tho2-mediated escort of Nrd1 regulates gene expression for lifespan maintenance
GSE261145	An end-to-end workflow to study newly synthesized mRNA following rapid protein depletion in Saccharomyces cerevisiae
GSE262171	Refined mechanism of promoter Nucleosome-Depleted Regions resetting after replication
GSE265942	Site saturation mutagenesis of 500 human protein domains
GSE265963	Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts
GSE267082	The effect of metal cations on the capture of Pol II-derived nascent transcripts in NET-seq experiments
GSE267736	The Effect of Spt5p on Transcriptional Directionality [ChIP-seq]
GSE268167	Growth-phase dependent control of rRNA synthesis in Saccharomyces cerevisiae [NET-seq]
GSE268168	Growth-phase dependent control of rRNA synthesis in Saccharomyces cerevisiae [RNA-seq]
GSE269275	Effect of the deletion of the genes involved in phospholipid synthesis pathway on gene expression (PAH1 DGK1)
GSE269277	Effect of the deletion of the genes involved in phospholipid synthesis pathway on gene expression (DKO)
GSE270789	Decapping activators Edc3 and Scd6 act redundantly with Dhh1 in nutrient-replete cells to post-transcriptionally repress starvation-induced pathways [ChIP-seq]
GSE270790	Decapping activators Edc3 and Scd6 act redundantly with Dhh1 in nutrient-replete cells to post-transcriptionally repress starvation-induced pathways [Ribo and RNA-seq]
GSE272969	Mechanism of homology search expansion during recombinational DNA repair
GSE273506	Conserved 5-methyluridine tRNA modification modulates ribosome translocation
GSE276940	Extreme positive epistasis for fitness in monosomic yeast strains - part 2