|
| Status |
Public on Jan 06, 2011 |
| Title |
Architectural complexity of the polyadenylated intestinal transcriptome revealed by hybrid RNA sequencing |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report the complexity of the polyadenylated transcriptome of the mouse intestinal tract assessed by a hybrid RNA-sequencing. We show that 90.72% of the polyA-derived unique reads map to known genes, but 9.28% of reads matched to nonannotated genomic regions.
|
| |
|
| Overall design |
Screening and verification of non-annotated transcriptional units by different RNA-Seq protocols.
|
| |
|
| Contributor(s) |
Klostermeier U, Rosenstiel P |
| Citation(s) |
21663663 |
| |
| Submission date |
May 05, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Robert Haesler |
| E-mail(s) |
r.haesler@mucosa.de
|
| Phone |
+49 (0) 431 597 5754
|
| Organization name |
University Clinic of Schleswig Holstein
|
| Department |
IKMB / 1st Dept. of Medicine
|
| Lab |
Functional Genomics Platform
|
| Street address |
Schittenhelmstr. 12
|
| City |
Kiel |
| ZIP/Postal code |
24105 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL10279 |
AB SOLiD System 2.0 (Mus musculus) |
|
| Samples (4)
|
| GSM541604 |
small_intestine_polyadenylated_RNA-Seq |
| GSM541605 |
colon_polyadenylated_RNA-Seq |
| GSM541606 |
small-intestine_ribosomal_RNA_depleted_RNA-Seq |
| GSM541607 |
colon_ribosomal_RNA_depleted_RNA-Seq |
|
| This SubSeries is part of SuperSeries: |
|
| Relations |
| SRA |
SRP003174 |
| BioProject |
PRJNA129287 |
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