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Series GSE220880 Query DataSets for GSE220880
Status Public on Feb 08, 2024
Title MNase titration-Seq of Saccharomyces cerevisiae.
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report change in the nucleosome occupancy and accessibility upon deletion of ATP-dependent chromatin remodellers (ISW1, ISW2 & CHD1) in Saccharomyces cerevisiae.
 
Overall design Both wildtype and triple deletion strains chromatin was crosslinked, digested with increasing concentrations of MNase, and after DNA purification NGS library was prepared and sequenced.
 
Contributor(s) Wani AH, Rashid F
Citation(s) 38848364
Submission date Dec 13, 2022
Last update date Jul 01, 2024
Contact name Ajaz ul Hamid Wani
E-mail(s) ahwani@kashmiruniversity.ac.in
Phone 9797918365
Organization name University of Kashmir
Department Biotechnology
Lab Genome Organization
Street address Hazratbal
City Srinagar
State/province Jammu and Kashmir
ZIP/Postal code 190006
Country India
 
Platforms (1)
GPL17342 Illumina HiSeq 2500 (Saccharomyces cerevisiae)
Samples (22)
GSM6825463 WT 0.39 U MNase Replicate-1
GSM6825464 WT 1.56 U MNase Replicate-1
GSM6825465 WT 6.25 U MNase Replicate-1
Relations
BioProject PRJNA911797

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220880_RAW.tar 457.6 Mb (http)(custom) TAR (of BEDGRAPH, BIGWIG, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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