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Series GSE223069 Query DataSets for GSE223069
Status Public on Jan 27, 2024
Title Targeting MYC induces lipid droplet accumulation by upregulation of HILPDA in clear cell renal cell carcinoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Metabolic reprogramming is critical during clear cell renal cell carcinoma (ccRCC) tumorigenesis, manifested by accumulation of lipid droplets (LDs), organelles that have emerged as new hallmarks of cancer. Yet, regulation of their biogenesis is still poorly understood. Here, we demonstrate that MYC inhibition in ccRCC cells lacking the von Hippel Lindau (VHL) gene leads to increased triglyceride content potentiating LD formation in a glutamine-dependent manner. Notably, LD accumulation is prevented, and tumor burden reduced in vivo upon concurrent inhibition of MYC signaling and glutamine metabolism. Furthermore, we identified the hypoxia inducible lipid droplet associated protein (HILPDA) as the key driver for induction of MYC-driven LD accumulation and demonstrated that conversely, proliferation, LD formation, and tumor growth are impaired upon its downregulation. Finally, analysis of ccRCC tissue as well as healthy renal control samples, postulated HILPDA as a specific ccRCC biomarker. Together, these discoveries provide an attractive approach for development of new therapeutic interventions for the treatment of this type of renal cancer.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for clear cell renal cell carcinoma cell line RCC4 with loss of VHL gene (RCC4 VHL-) and the same cell line wirh VHL reintroduction (RCC4 VHL+) These two cell lines were treated with either control (DMSO) or MYC inhibitor JQ1.
Web link https://www.pnas.org/doi/10.1073/pnas.2310479121
 
Contributor(s) Sainero-Alcolado L, Garde-Lapido E, Snaebjörnsson MT, Schoch S, Stevens I, Ruiz-Pérez M, Dyrager C, Pelechano V, Axelson H, Schulze A, Arsenian-Henriksson M
Citation(s) 38335255
Submission date Jan 17, 2023
Last update date Feb 10, 2024
Contact name Irene Stevens
E-mail(s) irene.stevens@scilifelab.se
Phone 0046728774966
Organization name Karolinska Institutet
Department Department of Microbiology, Tumor and Cell Biology
Lab Pelechano
Street address Tomtebodavägen 23A (Gamma5)
City Solna
ZIP/Postal code 17165
Country Sweden
 
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (12)
GSM6939171 RCC4 VHL+ DMSO R1
GSM6939173 RCC4 VHL+  JQ1 R1
GSM6939174 RCC4 VHL-  DMSO R1
Relations
BioProject PRJNA924799

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223069_VHL+_JQ1.vs.DMSO.txt.gz 2.0 Mb (ftp)(http) TXT
GSE223069_VHL-_JQ1.vs.DMSO.txt.gz 2.0 Mb (ftp)(http) TXT
GSE223069_raw_counts_table.txt.gz 733.7 Kb (ftp)(http) TXT
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Processed data are available on Series record

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