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| Status |
Public on May 10, 2023 |
| Title |
Chloroplast nucleoid is organized by membrane association of transcribed genes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 26, 2023 |
| Last update date |
Feb 23, 2024 |
| Contact name |
V Miguel Palomar |
| E-mail(s) |
vpalomar@umich.edu
|
| Phone |
7342195985
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| Organization name |
University of Michigan
|
| Department |
MCDB
|
| Lab |
Wierzbicki
|
| Street address |
1105 N. University Ave.
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (148)
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| GSM7117366 |
Chloroplast, ATAC, Nucleoid, Rep4 |
| GSM7117367 |
Chloroplast, ATAC, Nucleoid, Rep5 |
| GSM7117368 |
Chloroplast, ATAC, Nucleoid, Rep6 |
| GSM7117369 |
Chloroplast, ATAC, Nucleoid, Rep7 |
| GSM7117370 |
Chloroplast, ATAC, Nucleoid, Rep8 |
| GSM7117371 |
Chloroplast, ATAC, Nucleoid, Rep9 |
| GSM7117372 |
Chloroplast, ATAC, Nucleoid, Rep10 |
| GSM7117373 |
Chloroplast, ATAC, Nucleoid, Rep11 |
| GSM7117374 |
Chloroplast, ATAC, Naked, Rep1 |
| GSM7117375 |
Chloroplast, ATAC, Naked, Rep2 |
| GSM7117376 |
Chloroplast, ATAC, Naked, Rep3 |
| GSM7117377 |
Chloroplast, ATAC, Naked, Rep4 |
| GSM7117378 |
Chloroplast, ATAC, Naked, Rep5 |
| GSM7117379 |
Chloroplast, ATAC, Naked, Rep6 |
| GSM7117380 |
Chloroplast, ATAC, Naked, Rep7 |
| GSM7117381 |
Chloroplast, ATAC, Naked, Rep8 |
| GSM7117382 |
Chloroplast, ATAC, Naked, Rep9 |
| GSM7117383 |
Chloroplast, ATAC, Naked, Rep10 |
| GSM7117384 |
Chloroplast, ATAC, Naked, Rep11 |
| GSM7117397 |
RpoB, ptChIP, Day, Rep1 |
| GSM7117398 |
RpoB, ptChIP, Day, Rep2 |
| GSM7117399 |
RpoB, ptChIP, Day, Rep3 |
| GSM7117400 |
RpoB, ptChIP, Night, Rep1 |
| GSM7117401 |
RpoB, ptChIP, Night, Rep2 |
| GSM7117402 |
RpoB, ptChIP, Night, Rep3 |
| GSM7117403 |
RpoB, input, Day, Rep1 |
| GSM7117404 |
RpoB, input, Day, Rep2 |
| GSM7117405 |
RpoB, input, Day, Rep3 |
| GSM7117406 |
RpoB, input, Night, Rep1 |
| GSM7117407 |
RpoB, input, Night, Rep2 |
| GSM7117408 |
RpoB, input, Night, Rep3 |
| GSM7117409 |
Chloroplast, Membrane, EGS, Rep1 |
| GSM7117410 |
Chloroplast, Membrane, EGS, Rep2 |
| GSM7117411 |
Chloroplast, Membrane, EGS, Rep3 |
| GSM7117412 |
Chloroplast, Membrane, EGS, Rep4 |
| GSM7117413 |
Chloroplast, Membrane, nox, Rep1 |
| GSM7117414 |
Chloroplast, Membrane, nox, Rep2 |
| GSM7117415 |
Chloroplast, Membrane, nox, Rep3 |
| GSM7117416 |
Chloroplast, Membrane, nox, Rep4 |
| GSM7117417 |
Chloroplast, IPOD, Rep1 |
| GSM7117418 |
Chloroplast, IPOD, Rep2 |
| GSM7117419 |
Chloroplast, IPOD, Rep3 |
| GSM7117420 |
Chloroplast, IPOD, Rep4 |
| GSM7117421 |
Chloroplast, input, Rep1 |
| GSM7117422 |
Chloroplast, input, Rep2 |
| GSM7117423 |
Chloroplast, input, Rep3 |
| GSM7117424 |
Chloroplast, input, Rep4 |
| GSM7117425 |
SOLINA, 4do, Col0, Stroma, Rep1 |
| GSM7117426 |
SOLINA, 4do, Col0, Membrane, Rep1 |
| GSM7117427 |
SOLINA, 4do, Col0, Stroma, Rep2 |
| GSM7117428 |
SOLINA, 4do, Col0, Membrane, Rep2 |
| GSM7117429 |
SOLINA, 4do, Col0, Stroma, Rep3 |
| GSM7117430 |
SOLINA, 4do, Col0, Membrane, Rep3 |
| GSM7117431 |
SOLINA, 4do, sig2-2, Stroma, Rep1 |
| GSM7117432 |
SOLINA, 4do, sig2-2, Membrane, Rep1 |
| GSM7117433 |
SOLINA, 4do, sig2-2, Stroma, Rep2 |
| GSM7117434 |
SOLINA, 4do, sig2-2, Membrane, Rep2 |
| GSM7117435 |
SOLINA, 4do, sig2-2, Stroma, Rep3 |
| GSM7117436 |
SOLINA, 4do, sig2-2, Membrane, Rep3 |
| GSM7117437 |
SOLINA, 4do, sig6-1, Stroma, Rep1 |
| GSM7117438 |
SOLINA, 4do, sig6-1, Membrane, Rep1 |
| GSM7117439 |
SOLINA, 4do, sig6-1, Stroma, Rep2 |
| GSM7117440 |
SOLINA, 4do, sig6-1, Membrane, Rep2 |
| GSM7117441 |
SOLINA, 4do, sig6-1, Stroma, Rep3 |
| GSM7117442 |
SOLINA, 4do, sig6-1, Membrane, Rep3 |
| GSM7117443 |
SOLINA, 14do, Day, Stroma, Rep1 |
| GSM7117444 |
SOLINA, 14do, Day, Membrane, Rep1 |
| GSM7117445 |
SOLINA, 14do, Day, Stroma, Rep2 |
| GSM7117446 |
SOLINA, 14do, Day, Membrane, Rep2 |
| GSM7117447 |
SOLINA, 14do, Day, Stroma, Rep3 |
| GSM7117448 |
SOLINA, 14do, Day, Membrane, Rep3 |
| GSM7117449 |
SOLINA, 14do, Night, Stroma, Rep1 |
| GSM7117450 |
SOLINA, 14do, Night, Membrane, Rep1 |
| GSM7117451 |
SOLINA, 14do, Night, Stroma, Rep2 |
| GSM7117452 |
SOLINA, 14do, Night, Membrane, Rep2 |
| GSM7117453 |
SOLINA, 14do, Night, Stroma, Rep3 |
| GSM7117454 |
SOLINA, 14do, Night, Membrane, Rep3 |
| GSM8096035 |
ChIP,4do,chl27,input,Rep1 |
| GSM8096036 |
ChIP,4do,chl27,input,Rep2 |
| GSM8096037 |
ChIP,4do,chl27,input,Rep3 |
| GSM8096038 |
ChIP,4do,chl27,ChIP,Rep1 |
| GSM8096039 |
ChIP,4do,chl27,ChIP,Rep2 |
| GSM8096040 |
ChIP,4do,chl27,ChIP,Rep3 |
| GSM8096041 |
ChIP,4do,chlm,input,Rep1 |
| GSM8096042 |
ChIP,4do,chlm,input,Rep2 |
| GSM8096043 |
ChIP,4do,chlm,input,Rep3 |
| GSM8096044 |
ChIP,4do,chlm,ChIP,Rep1 |
| GSM8096045 |
ChIP,4do,chlm,ChIP,Rep2 |
| GSM8096046 |
ChIP,4do,chlm,ChIP,Rep3 |
| GSM8096047 |
ChIP,4do,Col0,input,Rep1 |
| GSM8096048 |
ChIP,4do,Col0,input,Rep2 |
| GSM8096049 |
ChIP,4do,Col0,input,Rep3 |
| GSM8096050 |
ChIP,4do,Col0,ChIP,Rep1 |
| GSM8096051 |
ChIP,4do,Col0,ChIP,Rep2 |
| GSM8096052 |
ChIP,4do,Col0,ChIP,Rep3 |
| GSM8096053 |
ChIP,4do,sig2-2,input,Rep1 |
| GSM8096054 |
ChIP,4do,sig2-2,input,Rep2 |
| GSM8096055 |
ChIP,4do,sig2-2,input,Rep3 |
| GSM8096056 |
ChIP,4do,sig2-2,ChIP,Rep1 |
| GSM8096057 |
ChIP,4do,sig2-2,ChIP,Rep2 |
| GSM8096058 |
ChIP,4do,sig22-,ChIP,Rep3 |
| GSM8096059 |
IPOD,4do,Col0,input,Rep1 |
| GSM8096060 |
IPOD,4do,Col0,input,Rep2 |
| GSM8096061 |
IPOD,4do,Col0,input,Rep3 |
| GSM8096062 |
IPOD,4do,Col0,IPOD,Rep1 |
| GSM8096063 |
IPOD,4do,Col0,IPOD,Rep2 |
| GSM8096064 |
IPOD,4do,Col0,IPOD,Rep3 |
| GSM8096065 |
IPOD,4do,pTAC3,input,Rep1 |
| GSM8096066 |
IPOD,4do,pTAC3,input,Rep2 |
| GSM8096067 |
IPOD,4do,pTAC3,input,Rep3 |
| GSM8096068 |
IPOD,4do,pTAC3,IPOD,Rep1 |
| GSM8096069 |
IPOD,4do,pTAC3,IPOD,Rep2 |
| GSM8096070 |
IPOD,4do,pTAC3,IPOD,Rep3 |
| GSM8096071 |
SOLINA,4do,chl27,Membrane,Rep1 |
| GSM8096072 |
SOLINA,4do,chl27,Membrane,Rep2 |
| GSM8096073 |
SOLINA,4do,chl27,Membrane,Rep3 |
| GSM8096074 |
SOLINA,4do,chl27,Membrane,Rep4 |
| GSM8096075 |
SOLINA,4do,chl27,Stroma,Rep1 |
| GSM8096076 |
SOLINA,4do,chl27,Stroma,Rep2 |
| GSM8096077 |
SOLINA,4do,chl27,Stroma,Rep3 |
| GSM8096078 |
SOLINA,4do,chl27,Stroma,Rep4 |
| GSM8096079 |
SOLINA,4do,chlm,Membrane,Rep1 |
| GSM8096080 |
SOLINA,4do,chlm,Membrane,Rep2 |
| GSM8096081 |
SOLINA,4do,chlm,Membrane,Rep3 |
| GSM8096082 |
SOLINA,4do,chlm,Membrane,Rep4 |
| GSM8096083 |
SOLINA,4do,chlm,Stroma,Rep1 |
| GSM8096084 |
SOLINA,4do,chlm,Stroma,Rep2 |
| GSM8096085 |
SOLINA,4do,chlm,Stroma,Rep3 |
| GSM8096086 |
SOLINA,4do,chlm,Stroma,Rep4 |
| GSM8096087 |
SOLINA,4do,Col0,Membrane,Rep1 |
| GSM8096088 |
SOLINA,4do,Col0,Membrane,Rep2 |
| GSM8096089 |
SOLINA,4do,Col0,Membrane,Rep3 |
| GSM8096090 |
SOLINA,4do,Col0,Membrane,Rep4 |
| GSM8096091 |
SOLINA,4do,Col0,Stroma,Rep1 |
| GSM8096092 |
SOLINA,4do,Col0,Stroma,Rep2 |
| GSM8096093 |
SOLINA,4do,Col0,Stroma,Rep3 |
| GSM8096094 |
SOLINA,4do,Col0,Stroma,Rep4 |
| GSM8096095 |
SOLINA,4do,sig2-2,Membrane,Rep1 |
| GSM8096096 |
SOLINA,4do,sig2-2,Membrane,Rep2 |
| GSM8096097 |
SOLINA,4do,sig2-2,Membrane,Rep3 |
| GSM8096098 |
SOLINA,4do,sig2-2,Membrane,Rep4 |
| GSM8096099 |
SOLINA,4do,sig2-2,Stroma,Rep1 |
| GSM8096100 |
SOLINA,4do,sig2-2,Stroma,Rep2 |
| GSM8096101 |
SOLINA,4do,sig2-2,Stroma,Rep3 |
| GSM8096102 |
SOLINA,4do,sig2-2,Stroma,Rep4 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE228224 |
Chloroplast nucleoid is organized by membrane association of transcribed genes [ATAC] |
| GSE228226 |
Chloroplast nucleoid is organized by membrane association of transcribed genes [ChIP] |
| GSE228227 |
Chloroplast nucleoid is organized by membrane association of transcribed genes [HIC] |
| GSE228228 |
Chloroplast nucleoid is organized by membrane association of transcribed genes [IPOD] |
| GSE228229 |
Chloroplast nucleoid is organized by membrane association of transcribed genes [SOLINA] |
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| Relations |
| BioProject |
PRJNA948853 |
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