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Series GSE228589 Query DataSets for GSE228589
Status Public on Jun 30, 2024
Title SMXL4/5-HsfA2 regulatory loop orchestrates plant growth-thermotolerance trade-off
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Heat stress (HS) is often a recurring and constant threat to crop productivity worldwide. For optimal crop survival, a sensitive and dynamic balance between stress-response and growth-control is required. Previous studies have demonstrated unique properties of 22-nt siRNAs in plant adaptation to environmental stresses, yet much less is known about how DCL2 regulate mechanisms under stresses in detail. Here, we demonstrate that the production of 22-nt siRNAs, particularly from SMXL4/5, might be crucial for plants to adapt to HS.
 
Overall design High-throughput sequencing of total mRNA from Col-0 (co), ski2 dcl4 (sd), ski2 dcl4 dcl2 (sdd), smxl4 smxl5 (s45), and smxl6 smxl7 smxl8 (s678) Arabidopsis seedlings with or without 44 ℃ 85 min heat stress
 
Contributor(s) Pan Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 30, 2023
Last update date Jun 30, 2024
Contact name Yan wei
E-mail(s) yanwei_bio@126.com
Organization name Southern University of Science and Technology
Street address shenzhenxueyuanroad
City Shenzhen
ZIP/Postal code 518000
Country China
 
Platforms (1)
GPL23157 HiSeq X Ten (Arabidopsis thaliana)
Samples (30)
GSM7132034 85co rep1
GSM7132036 85co rep2
GSM7132037 85co rep3
Relations
BioProject PRJNA950403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228589_rawdata.xlsx 8.1 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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