NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE228799 Query DataSets for GSE228799
Status Public on Jan 01, 2024
Title PAF1c links S-phase progression to immune evasion and MYC function in pancreatic carcinoma [BLISS]
Organism Mus musculus
Experiment type Other
Summary In pancreatic ductal adenocarcinoma (PDAC), MYC is required for S-phase progression and escape from immune surveillance. Here we show that recruitment of the PAF1c transcription elongation complex to RNA polymerase depends on MYC and that depletion of CTR9, a PAF1c subunit, enables long-term survival of PDAC-bearing mice. PAF1c is largely dispensable for unperturbed proliferation and regulation of MYC target genes. Instead, PAF1c limits DNA damage associated with transcription-replication conflicts by being essential for expression of long DNA repair genes. Surprisingly, the survival benefit conferred by CTR9 depletion is not due to DNA damage, but to restoration of immune surveillance. This occurs because CTR9 depletion releases RNA polymerase and the histone chaperone SPT6 from the body of long genes, promoting transcription of short genes that include MHC class-I genes. The data show that functionally distinct gene sets compete for elongation factors and directly link MYC-driven S-phase progression to tumor immune evasion.
 
Overall design Sequencing of double-strand breaks in cells exposed to AZD6738 with or without MYC depletion
 
Contributor(s) Gaballa A, Gallant P, Ade CP, Eilers M
Citation(s) 38365788
https://doi.org/10.1038%2Fs41467-024-45760-8
Submission date Apr 03, 2023
Last update date Feb 26, 2024
Contact name Martin Eilers
Organization name University of Wuerzburg
Department Chair for Biochemistry and Molecular Biology
Lab Martin Eilers
Street address Am Hubland
City Wuerzburg
ZIP/Postal code 97074
Country Germany
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (12)
GSM7138383 BLISS shMYC EtOH rep1
GSM7138384 BLISS shMYC EtOH rep2
GSM7138385 BLISS shMYC EtOH rep3
This SubSeries is part of SuperSeries:
GSE228800 PAF1c links S-phase progression to immune evasion and MYC function in pancreatic carcinoma
Relations
BioProject PRJNA951667

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228799_RAW.tar 10.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap