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Series GSE230228 Query DataSets for GSE230228
Status Public on Aug 07, 2023
Title Pseudouridine in small RNAs
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Pseudouridine is an isomer of uridine and is the most common RNA modification in both procaryotes and eucaryotes. It is found in ribosomal, transfer, and other structural RNA as well as in some mRNA and non-coding RNA. We have found abundant pseudouridine in small RNA and their precursors in Arabidopsis.
Overall design Identification of pseudouridylated small RNAs and their precursors in Arabidopsis thaliana
Contributor(s) Herridge RP, Martienssen RA, Dolata J, de Santis Alves C
Citation(s) 37398006
Submission date Apr 21, 2023
Last update date Aug 08, 2023
Contact name Rowan Paul Herridge
Organization name University of Otago
Department Biochemistry
Street address 710 Cumberland Street
City Dunedin
ZIP/Postal code 9016
Country New Zealand
Platforms (2)
GPL17970 Illumina MiSeq (Arabidopsis thaliana)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (70)
GSM7207810 Col-0 pollen, input RNA, replicate 1
GSM7207811 Col-0 pollen, input RNA, replicate 2
GSM7207812 Col-0 pollen, input RNA, replicate 3
BioProject PRJNA958093

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230228_RAW.tar 486.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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