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| Status |
Public on Mar 21, 2024 |
| Title |
The yeast genome is globally accessible in living cells |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Apr 21, 2023 |
| Last update date |
Mar 22, 2024 |
| Contact name |
David Johannes Clark |
| E-mail(s) |
clarkda@mail.nih.gov
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| Phone |
3014966966
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| Organization name |
NICHD, NIH
|
| Department |
DDB
|
| Lab |
SCGE
|
| Street address |
6 Center Drive Bldg 6A Rm 2A02
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
| GPL25739 |
MinION (Saccharomyces cerevisiae) |
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| Samples (134)
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| GSM7177871 |
wild type live cells, 120 min SM, rep 1 |
| GSM7177872 |
wild type live cells, 240 min SM, rep 1 |
| GSM7177873 |
wild type live cells, 0 min SM, rep 2 |
| GSM7177874 |
wild type live cells, 30 min SM, rep 2 |
| GSM7177875 |
wild type live cells, 60 min SM, rep 2 |
| GSM7177876 |
wild type live cells, 120 min SM, rep 2 |
| GSM7177877 |
wild type live cells, 240 min SM, rep 2 |
| GSM7177878 |
arrested wild type live cells, 0 min alpha-factor, rep 1 |
| GSM7177879 |
arrested wild type live cells, 180 min alpha-factor, 0 min SM, rep 1 |
| GSM7177880 |
arrested wild type live cells, 210 min alpha-factor, 30 min SM, rep 1 |
| GSM7177881 |
arrested wild type live cells, 240 min alpha-factor, 60 min SM, rep 1 |
| GSM7177882 |
arrested wild type live cells, 300 min alpha-factor, 180 min SM, rep 1 |
| GSM7177883 |
arrested wild type live cells, 420 min alpha-factor, 240 min SM, rep 1 |
| GSM7177884 |
arrested wild type live cells, 0 min alpha-factor, rep 2 |
| GSM7177885 |
arrested wild type live cells, 180 min alpha-factor, 0 min SM, rep 2 |
| GSM7177886 |
arrested wild type live cells, 210 min alpha-factor, 30 min SM, rep 2 |
| GSM7177887 |
arrested wild type live cells, 240 min alpha-factor, 60 min SM, rep 2 |
| GSM7177888 |
arrested wild type live cells, 300 min alpha-factor, 180 min SM, rep 2 |
| GSM7177889 |
arrested wild type live cells, 420 min alpha-factor, 240 min SM, rep 2 |
| GSM7177890 |
wild type live cells, Dam-GFP, 0 min SM, rep 1 |
| GSM7177891 |
wild type live cells, Dam-GFP, 30 min SM, rep 1 |
| GSM7177892 |
wild type live cells, Dam-GFP, 60 min SM, rep 1 |
| GSM7177893 |
wild type live cells, Dam-GFP, 120 min SM, rep 1 |
| GSM7177894 |
wild type live cells, Dam-GFP, 240 min SM, rep 1 |
| GSM7177895 |
wild type live cells, Dam-GFP, 0 min SM, rep 2 |
| GSM7177896 |
wild type live cells, Dam-GFP, 30 min SM, rep 2 |
| GSM7177897 |
wild type live cells, Dam-GFP, 60 min SM, rep 2 |
| GSM7177898 |
wild type live cells, Dam-GFP, 120 min SM, rep 2 |
| GSM7177899 |
wild type live cells, Dam-GFP, 240 min SM, rep 2 |
| GSM7177900 |
wild type live cells, 0 min auxin, rep 1 |
| GSM7177901 |
wild type live cells, 180 min auxin, rep 1 |
| GSM7177902 |
wild type live cells, 240 min auxin, 0 min SM, rep 1 |
| GSM7177903 |
wild type live cells, 270 min auxin, 30 min SM, rep 1 |
| GSM7177904 |
wild type live cells, 300 min auxin, 60 min SM, rep 1 |
| GSM7177905 |
wild type live cells, 360 min auxin, 120 min SM, rep 1 |
| GSM7177906 |
wild type live cells, 420 min auxin, 180 min SM, rep 1 |
| GSM7177907 |
wild type live cells, 480 min auxin, 240 min SM, rep 1 |
| GSM7177908 |
wild type live cells, 0 min auxin, rep 2 |
| GSM7177909 |
wild type live cells, 180 min auxin, rep 2 |
| GSM7177910 |
wild type live cells, 240 min auxin, 0 min SM, rep 2 |
| GSM7177911 |
wild type live cells, 270 min auxin, 30 min SM, rep 2 |
| GSM7177912 |
wild type live cells, 300 min auxin, 60 min SM, rep 2 |
| GSM7177913 |
wild type live cells, 360 min auxin, 120 min SM, rep 2 |
| GSM7177914 |
wild type live cells, 420 min auxin, 180 min SM, rep 2 |
| GSM7177915 |
wild type live cells, 480 min auxin, 240 min SM, rep 2 |
| GSM7177916 |
Rsc8-degron live cells, 0 min auxin, rep 1 |
| GSM7177917 |
Rsc8-degron live cells, 180 min auxin, rep 1 |
| GSM7177918 |
Rsc8-degron live cells, 240 min auxin, 0 min SM, rep 1 |
| GSM7177919 |
Rsc8-degron live cells, 270 min auxin, 30 min SM, rep 1 |
| GSM7177920 |
Rsc8-degron live cells, 300 min auxin, 60 min SM, rep 1 |
| GSM7177921 |
Rsc8-degron live cells, 360 min auxin, 120 min SM, rep 1 |
| GSM7177922 |
Rsc8-degron live cells, 420 min auxin, 180 min SM, rep 1 |
| GSM7177923 |
Rsc8-degron live cells, 480 min auxin, 240 min SM, rep 1 |
| GSM7177924 |
Rsc8-degron live cells, 0 min auxin, rep 2 |
| GSM7177925 |
Rsc8-degron live cells, 180 min auxin, rep 2 |
| GSM7177926 |
Rsc8-degron live cells, 240 min auxin, 0 min SM, rep 2 |
| GSM7177927 |
Rsc8-degron live cells, 270 min auxin, 30 min SM, rep 2 |
| GSM7177928 |
Rsc8-degron live cells, 300 min auxin, 60 min SM, rep 2 |
| GSM7177929 |
Rsc8-degron live cells, 360 min auxin, 120 min SM, rep 2 |
| GSM7177930 |
Rsc8-degron live cells, 420 min auxin, 180 min SM, rep 2 |
| GSM7177931 |
Rsc8-degron live cells, 480 min auxin, 240 min SM, rep 2 |
| GSM7177932 |
Isw1-degron live cells, 0 min auxin, rep 1 |
| GSM7177933 |
Isw1-degron live cells, 180 min auxin, rep 1 |
| GSM7177934 |
Isw1-degron live cells, 240 min auxin, 0 min SM, rep 1 |
| GSM7177935 |
Isw1-degron live cells, 270 min auxin, 30 min SM, rep 1 |
| GSM7177936 |
Isw1-degron live cells, 300 min auxin, 60 min SM, rep 1 |
| GSM7177937 |
Isw1-degron live cells, 360 min auxin, 120 min SM, rep 1 |
| GSM7177938 |
Isw1-degron live cells, 420 min auxin, 180 min SM, rep 1 |
| GSM7177939 |
Isw1-degron live cells, 480 min auxin, 240 min SM, rep 1 |
| GSM7177940 |
Isw1-degron live cells, 0 min auxin, rep 2 |
| GSM7177941 |
Isw1-degron live cells, 180 min auxin, rep 2 |
| GSM7177942 |
Isw1-degron live cells, 240 min auxin, 0 min SM, rep 2 |
| GSM7177943 |
Isw1-degron live cells, 270 min auxin, 30 min SM, rep 2 |
| GSM7177944 |
Isw1-degron live cells, 300 min auxin, 60 min SM, rep 2 |
| GSM7177945 |
Isw1-degron live cells, 360 min auxin, 120 min SM, rep 2 |
| GSM7177946 |
Isw1-degron live cells, 420 min auxin, 180 min SM, rep 2 |
| GSM7177947 |
Isw1-degron live cells, 480 min auxin, 240 min SM, rep 2 |
| GSM7177948 |
Chd1-degron live cells, 0 min auxin, rep 1 |
| GSM7177949 |
Chd1-degron live cells, 180 min auxin, rep 1 |
| GSM7177950 |
Chd1-degron live cells, 240 min auxin, 0 min SM, rep 1 |
| GSM7177951 |
Chd1-degron live cells, 270 min auxin, 30 min SM, rep 1 |
| GSM7177952 |
Chd1-degron live cells, 300 min auxin, 60 min SM, rep 1 |
| GSM7177953 |
Chd1-degron live cells, 360 min auxin, 120 min SM, rep 1 |
| GSM7177954 |
Chd1-degron live cells, 420 min auxin, 180 min SM, rep 1 |
| GSM7177955 |
Chd1-degron live cells, 480 min auxin, 240 min SM, rep 1 |
| GSM7177956 |
Chd1-degron live cells, 0 min auxin, rep 2 |
| GSM7177957 |
Chd1-degron live cells, 180 min auxin, rep 2 |
| GSM7177958 |
Chd1-degron live cells, 240 min auxin, 0 min SM, rep 2 |
| GSM7177959 |
Chd1-degron live cells, 270 min auxin, 30 min SM, rep 2 |
| GSM7177960 |
Chd1-degron live cells, 300 min auxin, 60 min SM, rep 2 |
| GSM7177961 |
Chd1-degron live cells, 360 min auxin, 120 min SM, rep 2 |
| GSM7177962 |
Chd1-degron live cells, 420 min auxin, 180 min SM, rep 2 |
| GSM7177963 |
Chd1-degron live cells, 480 min auxin, 240 min SM, rep 2 |
| GSM7177964 |
Isw1/Chd1-degron live cells, 0 min auxin, rep 1 |
| GSM7177965 |
Isw1/Chd1-degron live cells, 180 min auxin, rep 1 |
| GSM7177966 |
Isw1/Chd1-degron live cells, 240 min auxin, 0 min SM, rep 1 |
| GSM7177967 |
Isw1/Chd1-degron live cells, 270 min auxin, 30 min SM, rep 1 |
| GSM7177968 |
Isw1/Chd1-degron live cells, 300 min auxin, 60 min SM, rep 1 |
| GSM7177969 |
Isw1/Chd1-degron live cells, 360 min auxin, 120 min SM, rep 1 |
| GSM7177970 |
Isw1/Chd1-degron live cells, 420 min auxin, 180 min SM, rep 1 |
| GSM7177971 |
Isw1/Chd1-degron live cells, 480 min auxin, 240 min SM, rep 1 |
| GSM7177972 |
Isw1/Chd1-degron live cells, 0 min auxin, rep 2 |
| GSM7177973 |
Isw1/Chd1-degron live cells, 180 min auxin, rep 2 |
| GSM7177974 |
Isw1/Chd1-degron live cells, 240 min auxin, 0 min SM, rep 2 |
| GSM7177975 |
Isw1/Chd1-degron live cells, 270 min auxin, 30 min SM, rep 2 |
| GSM7177976 |
Isw1/Chd1-degron live cells, 300 min auxin, 60 min SM, rep 2 |
| GSM7177977 |
Isw1/Chd1-degron live cells, 360 min auxin, 120 min SM, rep 2 |
| GSM7177978 |
Isw1/Chd1-degron live cells, 420 min auxin, 180 min SM, rep 2 |
| GSM7177979 |
Isw1/Chd1-degron live cells, 480 min auxin, 240 min SM, rep 2 |
| GSM7177980 |
wild type nuclei, No Dam, rep 1 |
| GSM7177981 |
wild type nuclei, 0.16 nM Dam, rep 1 |
| GSM7177982 |
wild type nuclei, 0.31 nM Dam, rep 1 |
| GSM7177983 |
wild type nuclei, 0.63 nM Dam, rep 1 |
| GSM7177984 |
wild type nuclei, 1.25 nM Dam, rep 1 |
| GSM7177985 |
wild type nuclei, No Dam, rep 2 |
| GSM7177986 |
wild type nuclei, 0.16 nM Dam, rep 2 |
| GSM7177987 |
wild type nuclei, 0.31 nM Dam, rep 2 |
| GSM7177988 |
wild type nuclei, 0.63 nM Dam, rep 2 |
| GSM7177989 |
wild type nuclei, 1.25 nM Dam, rep 2 |
| GSM7212151 |
wild type live cells, 0 m SM, replicate 1 |
| GSM7212152 |
wild type live cells, 30 m SM, replicate 1 |
| GSM7212153 |
wild type live cells, 60 m SM, replicate 1 |
| GSM7212154 |
wild type live cells, 120 m SM, replicate 1 |
| GSM7212155 |
wild type live cells, 240 m SM, replicate 1 |
| GSM7212156 |
wild type live cells, 0 m SM, replicate 2 |
| GSM7212157 |
wild type live cells, 30 m SM, replicate 2 |
| GSM7212158 |
wild type live cells, 60 m SM, replicate 2 |
| GSM7212159 |
wild type live cells, 120 m SM, replicate 2 |
| GSM7212160 |
wild type live cells, 240 m SM, replicate 2 |
| GSM7212161 |
wild type live cells, no treatment, replicate 1 |
| GSM7212162 |
wild type live cells, no treatment, replicate 2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE229797 |
The yeast genome is globally accessible in living cells [Illumina] |
| GSE230306 |
The yeast genome is globally accessible in living cells [OxfordNanopore] |
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| Relations |
| BioProject |
PRJNA958222 |
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