GEO Accession viewer

GSE65766	H3K36 methylation promotes longevity by enhancing transcriptional fidelity [ChIP-Seq]
GSE65767	H3K36 methylation promotes longevity by enhancing transcriptional fidelity
GSE65902	The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally
GSE66386	High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data
GSE68016	Mapping nucleosome resolution chromosome folding in yeast by Micro-C
GSE68022	Identification of New Branch Points and Unconventional Introns in Saccharomyces cerevisiae
GSE69472	RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ
GSE71050	Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase (BrdU)
GSE71052	Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
GSE72106	Genomic nucleosome organization reconstituted with pure proteins
GSE72529	Mapping the Landscape of a Eukaryotic Degronome
GSE73428	Contrasting roles of the RSC and ISW1/CHD1 chromatin remodelers in RNA polymerase II elongation and termination
GSE74090	Dynamics of chromatin maturation after genome replication
GSE74454	Synchronized translation programs across cellular compartments
GSE76154	Genome-wide mapping of the binding sites of transcription factor Cst6p in Saccharomyces cerevisiae
GSE76444	RNA-seq to identify P-body associated mRNAs upon glucose starvation, Na+ and Ca2+ stresses
GSE81127	A Dynamic Model for the Function of Mediator Modules In Vivo
GSE81481	HSF1 and MOT1-expression and binding: Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters
GSE81531	Genome-wide expression in asymmetric histone H3 mutants in Saccharomyces cerevisiae
GSE81787	HSF1 ChIP-seq: Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters
GSE83348	The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Promotes H2B Ubiquitylation Through a Direct Interaction with the Ubiquitin Conjugase Rad6
GSE83546	Locus-specific isolation of transcription elongation complexes from Saccharomyces cerevisiae
GSE83936	Massively parallel interrogation of the effects of gene expression levels on cellular fitness
GSE84240	Elucidating Combinatorial Chromatin States at Single-Nucleosome Resolution
GSE84910	Nucleosomal signatures impose nucleosome positioning in coding and non-coding sequences in the genome
GSE85220	Micro-C XL: assaying chromosome conformation at length scales from the nucleosome to the entire genome
GSE85590	The Gcn4 Transcription Factor Reduces Protein Synthesis Capacity and Extends Yeast Lifespan [RNA-Seq]
GSE85591	The Gcn4 Transcription Factor Reduces Protein Synthesis Capacity and Extends Yeast Lifespan
GSE85843	Dissecting Gene Expression Changes Accompanying a Euploid-Aneuploid Phenotypic Switch
GSE86203	Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements
GSE86419	Analysis of Pol II position in asynchronous, G1- or G2/M-arrested cells
GSE87735	The ground-state and evolution of promoter directionality revealed by a functional evolutionary approach
GSE88941	Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion
GSE88952	The dynamic three-dimensional organization of the diploid yeast genome
GSE89238	RNA binding by the histone methyltransferases Set1 and Set2
GSE90902	Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle
GSE91064	Study of ribosome dynamics after eIF5A depletion in budding yeast
GSE93662	Genome-wide determinants of sequence-specific DNA binding
GSE94864	Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1
GSE95788	Extensive structural differences of closely related 3’ mRNA isoforms: links to Pab1 binding and mRNA stability
GSE96891	A structural “toggle” in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiency
GSE97913	CRAC of yeast RNA polymerase II in various thermosensitive strains at permissive and non-permissive temperature and anchor-away strains with the addition of rapamycin.
GSE97915	RNA-seq of total RNA in various anchor away strains with and without the addition of rapamycin.
GSE98395	ChIP Seq analysis of Cse4 in mutants of Psh1, Cac2, the double mutant, and WT upon overexpression of Cse4 in Saccharomyces cerevisiae.
GSE98397	Chromatin assembly factor-1 (CAF-1) chaperone regulates Cse4 deposition at active promoter regions in budding yeast
GSE98524	Genome wide Mms1-binding sites in S. cerevisiae
GSE98543	Transfer RNA Genes Affect Chromosome Architecture and Function
GSE98573	Widespread and precise epigenomic reprogramming in response to heat shock
GSE98788	Transcript leader elements contribute to competitive discrimination of mRNAs by the translational machinery
GSE99170	RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome
GSE99304	The stress granule transcriptome reveals principles of mRNA accumulation in stress granules.
GSE100352	Ribonucleotides incorporated by the yeast mitochondrial DNA polymerase are not repaired
GSE100626	Transcriptome-wide analysis of roles for tRNA modifications in translational regulation
GSE101290	INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division
GSE104124	An optimized FAIRE procedure for low cell numbers in yeast.
GSE104134	RNA-Seq on wild type and Linear Minichromosome strains arrested in metaphase
GSE104135	Convergent genes shape budding yeast pericentromeres
GSE104252	Learning the regulatory grammar of yeast 5' untranslated regions from a large library of random sequences
GSE104484	Binding to RNA regulates Set1 function [ChIP-seq]
GSE104485	Binding to RNA regulates Set1 function [CRAC-seq]
GSE104486	Binding to RNA regulates Set1 function
GSE104878	Deciphering cis-regulatory logic with 100 million synthetic promoters
GSE104903	Deciphering cis-regulatory logic with 100 million synthetic promoters (MNase)
GSE105111	Persistent DNA-break potential near telomeres increases initiation of meiotic recombination on short chromosomes
GSE107250	Study of ribosome dynamics after osmotic stress in Lsm1 and Pat1 deletions
GSE107718	The extent of ribosome queuing in budding yeast
GSE107744	Characterisation of COMPASS activity in ageing yeast
GSE107997	Membrane stress and perturbed nutrient homeostasis as common attributes of heterogeneous aneuploidy
GSE108608	Analysis of transcriptional responses of Saccharomyces cerevisiae to mannitol and 4-deoxy-L-erythro-5-hexoseulose uronate (DEH).
GSE108948	Fine Resolution Mapping of TF binding and Chromatin Interactions
GSE109241	Rif1 acts through Protein Phosphatase 1 and independent of replication timing to suppresses telomere extension in budding yeast
GSE109343	Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast
GSE109527	tRNA pool analysis of S. cerevisiae using tRNA-HySeq
GSE109926	Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose [eCLIP]
GSE109927	Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose
GSE110241	DNA polymerase η contributes to lagging strand synthesis
GSE110409	Spontaneous mutations in CYC8 and MIG1 suppress the short chronological lifespan of budding yeast lacking SNF1/AMPK
GSE110413	Gcn4 binding in coding regions can activate internal and canonical 5’ promoters in yeast [RNA-seq]
GSE110502	Characterizing protein-DNA binding event subtypes in ChIP-exo data
GSE110681	Simplified ChIP-exo assays
GSE112061	Structural Analysis of the Ash2L/Dpy-30 Complex Reveals a Heterogeneity in H3K4 Methylation
GSE112522	Asymmetric partition of parental histone (H3-H4)2 tetramers onto replicating DNA strands
GSE112581	Transcriptional responses of Saccharomyces cerevisiae and Lachancea thermotolerans in mixed-culture wine fermentation
GSE112721	Mediator is essential for small nuclear and nucleolar RNA transcription in yeast
GSE112997	Temporal profiling of redox-dependent heterogeneity in single cells
GSE114077	Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness
GSE114098	A Combined Approach Reveals a Regulatory Mechanism Coupling Src's Kinase Activity, Localization, and Phosphotransferase-Independent Functions
GSE114589	CRAC of yeast RNA polymerase II in anchor-away and auxin-degron strains.
GSE114731	Long-range effects of centromeres on the binding of the meiotic chromosome axis factor Red1
GSE115092	SNP-ChIP: a versatile and tag-free method to quantify changes in protein binding across the genome
GSE115692	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation (yeast)
GSE115693	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation
GSE115775	Spt6 is required for the fidelity of promoter selectivity
GSE115897	Separable recruitment of DNA Polymerase α for leading- and lagging-strand replication initiation
GSE116505	BAR-Seq to study history-dependent behavior
GSE116646	A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation
GSE116749	Mitoprotein-induced stress launches a global transcriptional fail-safe program
GSE117598	Nucleosome positioning - Transient Depletion and Recovery of the Essential RSC Chromatin Remodeling Complex [MNase-Seq]
GSE117601	Transcriptome analysis of Drrp6 and Drrp6, sen1DNIM by RNAseq
GSE117604	Termination of non-coding transcription in yeast relies on both a CTD-interaction domain and a CTD-mimic in Sen1
GSE117624	Transcriptional profiles of [ESI+]
GSE117653	Genetic and Epigenetic Determinants Establish a Continuum of Hsf1 Occupancy and Activity Across the Yeast Genome
GSE118078	Processing of eukaryotic Okazaki fragments by redundant nucleases can be uncoupled from ongoing DNA replication in vivo
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts
GSE118147	Peptide design by optimization on a data-parameterized protein interaction landscape
GSE118213	Nucleosome positioning - Transient Depletion and Recovery of the Essential RSC Chromatin Remodeling Complex [RNA-Seq]
GSE118214	Nucleosome positioning - Transient Depletion and Recovery of the Essential RSC Chromatin Remodeling Complex
GSE118534	FACT mediates cohesin function on chromatin
GSE118676	Stoichiometric Production of Protein-Complex Components in Eukaryotes Without Widespread Feedback Regulation
GSE118758	Detection of cryptic start codons in set2D by 5PSeq
GSE118818	Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance
GSE119134	Detection of cryptic unstable transcripts associated with ribosomes in yeast
GSE120188	Construction of Mini-Chemostats for High-throughput Strain Characterization
GSE120955	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation (yeast II)
GSE120956	DNA accessibility is not the primary determinant of chromatin-mediated gene regulation (yeast III)
GSE121543	The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo
GSE121594	RNA-Seq analysis of Yeast following temporal knockdown of core spliceosome components
GSE121635	Demethylation of the protein phosphatase PP2A promotes the demethylation of histones to enable their function as a methyl group sink
GSE121927	Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing
GSE121941	Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads
GSE122782	Flag-Sae2 ChIP seq in yeast
GSE122954	De novo detection of m6A modification in Saccharomyces cerevisiae at single nucleotide resolution
GSE122955	Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution [I]
GSE122961	Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution
GSE123118	Systematic evaluation of conditional gene essentiality changes across 4 yeast strains
GSE123237	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning [MNase-Seq]
GSE123238	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning [ChIP-Seq]
GSE123239	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning
GSE123846	Generation and characterization of phosphosite mutants in S. cerevisiae
GSE124132	Yeast sirutin family members maintain trannscription homeostasis to ensure genome stability
GSE124428	A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis, to couple metabolism to cell cycle progression.
GSE125162	Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments
GSE125258	Analysis by RNA-seq of the changes in the transcriptome induced by cohesin inactivation
GSE125843	Distinct transcriptional roles for Histone H3-K56 acetylation during the cell cycle
GSE126435	Transcriptional responses to glutaminyl tRNA synthetase Gln4p depletion in Saccharomyces cerevisiae
GSE126526	Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance [RNA-Seq]
GSE127178	Next generation sequencing facilitates transcriptome analysis of wild type and Kap114-knockout Saccharomyces cerevisiae under high salt conditions
GSE127851	Genetic screen of the yeast environmental stress response dynamics uncovers a succession of regulatory phases
GSE127940	Principles of Meiotic Chromosome Assembly
GSE128010	Transcriptome analysis by RNA-Seq of spp381-ts mutant
GSE128221	Conformation of the budding yeast pericentromere in metaphase
GSE128290	Long-range single-molecule mapping of chromatin accessibility in eukaryotes
GSE128599	Effect of cycloheximide in the co-translation mRNA degradation pattern in set2D and rrp6D strains
GSE129195	Genomewide Localization of Yeast CENP-A (Cse4) in Wild-type, met30-6, and cdc4-1 Strains
GSE131558	Cohesin causes replicative DNA damage by trapping DNA topological stress
GSE131639	Phase separation directs ubiquitination of gene body nucleosomes
GSE131994	Topoisomerases modulate the timing of meiotic DNA breakage and chromosome morphogenesis in Saccharomyces cerevisiae
GSE133457	Specialized ribosomal protein genes promote drug resistance through modulation of translation
GSE134219	Genomewide nucleotide-resolution mapping of single-strand breaks and lesions by GLOE-Seq [digestion]
GSE134221	Genomewide nucleotide-resolution mapping of single-strand breaks and lesions by GLOE-Seq [HO endonuclease]
GSE134222	Genomewide nucleotide-resolution mapping of single-strand breaks and lesions by GLOE-Seq [UV treatment]
GSE134223	Genomewide nucleotide-resolution mapping of single-strand breaks and lesions by GLOE-Seq [CDC9 inactivation]
GSE134225	Genome-wide nucleotide-resolution mapping of DNA replication patterns, single-strand breaks and lesions by GLOE-Seq
GSE134427	Homotypic cooperativity and collective binding are determinants of bHLH specificity and function
GSE135178	DNA copy number measurement of genome replication dynamics by high-throughput sequencing – the sort-seq, sync-seq and MFA-seq family
GSE135826	Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
GSE136021	E-ChRPs: Engineered Chromatin Remodeling Proteins for Precise Nucleosome Positioning [RNA-Seq]
GSE136675	Nucleotide resolution mapping of Top2-linked DNA breaks in the yeast genome
GSE136940	Humans and other commonly used model organisms are resistant to cycloheximide-mediated biases in ribosome profiling experiments
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts
GSE137881	High-resolution mapping of budding yeast Nab3, Nrd1, and RNA polymerase II by CRAC in wild-type and rrp6∆ strains.
GSE138023	Long term cellular adaptation of protein levels to metabolic flux, coordinated by cyclic transcription
GSE138448	High-resolution mapping of transcribing RNAPII by CRAC in the presence of different Sen1 variants
GSE138465	High-resolution transcriptome-wide maps of Sen1 RNA-binding by CRAC
GSE138559	Widespread prion-based control of growth and differentiation strategies in Saccharomyces cerevisiae
GSE139860	Replication-fork arrest at tRNA genes in S. cerevisiae does not require tRNA transcription and is facilitated by topoisomerases and Rad18-dependent repair pathways
GSE140563	Investigating the mechanism by which the natural product compound puupehenone potentiates the antifungal drug caspofungin
GSE140923	Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes
GSE141269	An alternative transcriptome shapes cell fate transitions in yeast (TIF-seq)
GSE141676	Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms
GSE141713	Binding and regulation of transcription by yeast Ste12 variants to drive mating and invasion phenotypes
GSE141884	Reduced cellular levels of DNA polymerase delta alter replication-fork dynamics and enzymology, and globally impair lagging-strand processing
GSE142457	Defining the influence of the A12 subunit on transcription elongation and termination by rna polymerase I
GSE142524	Simple and efficient measurement of transcription initiation and transcript levels with STRIPE-seq
GSE144072	INO80C chromatin remodeler prevents promiscuous transcription at replication origins
GSE144321	Separable functions of Tof1/Timeless in intra-S-checkpoint signalling, replisome stability and DNA topological stress
GSE144437	Transcription factor binding on designed libraries measured by CCRAs
GSE144657	Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses
GSE145032	Genomewide nucleotide-resolution mapping of single-strand breaks and lesions by GLOE-Seq [MMS treatment]
GSE145494	Architectural Mediator subunits are differentially essential for global transcription in yeast (ChIP-seq)
GSE146350	ATAC-Seq of the Yeast Metabolic Cycle
GSE146368	Extensive 5'-Surveillance Guards Against Non-Canonical NAD-Caps of Nuclear mRNAs in Yeast
GSE147284	Cytosolic aggregation of mitochondrial proteins enhances degeneration of cellular homeostasis
GSE147389	The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription
GSE147927	A high-resolution protein architecture of the budding yeast genome
GSE148166	Stress-induced translation inhibition through release of 40S scanning initiation factors
GSE148674	NuA3 HAT contributes to the Rpd3 containing HDACs-mediated regulation of mRNA and lncRNA expression dynamics
GSE149163	Humanizing the Yeast Origin Recognition Complex
GSE149801	Basis of Specificity for a Conserved Promiscuous Chromatin Remodeling Protein [ChIP-Seq]
GSE149803	Basis of Specificity for a Conserved Promiscuous Chromatin Remodeling Protein [RNA-Seq]
GSE149804	Basis of Specificity for a Conserved Promiscuous Chromatin Remodeling Protein
GSE149807	Strand-specific ChIP-seq at DNA breaks distinguishes single versus doubled stranded DNA binding and refutes single stranded nucleosomes
GSE150200	Basis of Specificity for a Conserved Promiscuous Chromatin Remodeling Protein [Mnase-seq]
GSE151185	A cell non-autonomous mechanism of yeast chronological aging regulated by caloric restriction and one-carbon metabolism
GSE151196	The transcriptional elongation rate regulates alternative polyadenylation in yeast
GSE151348	Global repression driven by RNA polymerase II stalling in yeast
GSE151468	Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function [RNA-Seq]
GSE151632	A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae
GSE151692	Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function [ChIP-Seq]
GSE151693	Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function
GSE151784	Fitness profiling using the yeast deletion library to determine contribution of all non-essential genes to survival under acute exposure to lethal ethanol stress
GSE151785	Transcriptional profiling by RNA-seq of an evolved hyper-ethanol surviving yeast strain and a wild-type yeast strain at various stress time points
GSE151786	Ethanol stress in yeast
GSE151898	Potassium starvation induces autophagy in yeast
GSE152093	Potential modulation of Puf3 chromatin association mediated by Rpb4
GSE152095	Rpb4 and Puf3
GSE152375	Development of High-throughput 5Pseq and detection of ribosome stalls at termination level in Saccharomyces cerevisiae
GSE152452	Yeast three hybrid experiment
GSE152621	High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq
GSE152881	High-resolution, genome-wide mapping of positive supercoiling in chromosomes [yChIP]
GSE152882	High-resolution, genome-wide mapping of positive supercoiling in chromosomes
GSE153003	SWR1-independent association of H2A.Z to the LINC complex promotes meiotic chromosome motion
GSE153072	CRAC of yeast RNA polymerase II in the absence or upon depletion of Xrn1
GSE153567	The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae
GSE154515	mDrop-seq: Massively parallel single-cell RNA-seq of Saccharomyces Cerevisiae and Candida Albicans
GSE154643	in vivo mRNA display: Large-scale Proteomics by Next Generation Sequencing
GSE154811	Genome-wide analysis of DNA replication and double strand breaks by TrAEL-seq
GSE155032	Transcriptomic profiling of S. cerevisiae and S. boulardii during growth in host-related conditions
GSE155878	Rate of transcription elongation and sequence-specific pausing by RNA polymerase I directly influence ribosomal RNA processing
GSE155989	Genome Wide Effect of Tetracycline, Doxycycline and 4-epidoxycycline on gene expression in Saccharomyces cerevisiae
GSE156040	Two pathways drive meiotic chromosome axis assembly in Saccharomyces cerevisiae
GSE156224	The yeast ISW1b ATP-dependent chromatin remodeler is critical for nucleosome spacing and dinucleosome resolution
GSE159291	Spt4 helps RNAPII pass the +2 nucleosome barrier in vivo
GSE159384	Investigation of impact of DNA synthesis during Break-induced replication on transcription
GSE159409	An inducible CRISPR-interference library for genetic interrogation of Saccharomyces cerevisiae biology
GSE159603	Dynamics of transcription elongation are finely-tuned by dozens of regulatory factors
GSE159665	Transcript-specific determinants of pre-mRNA splicing revealed through in vivo kinetic analyses of the 1st and 2nd chemical steps
GSE159870	Harmful R loops are prevented via different cell cycle specific mechanisms
GSE160046	The consequences of selection bias in analysis of pre-mRNA splicing
GSE160161	Using DMS-MaPseq to dissect structural differences of ribosomal RNA in different pre-40S intermediates
GSE160821	Essential histone chaperones collaborate to regulate transcription and chromatin integrity
GSE161140	The Cdk8 kinase module regulates Mediator-RNA polymerase II interaction
GSE163045	The evolution, evolvability, and engineering of gene regulatory DNA [GPRA]
GSE164186	High-resolution, genome-wide mapping of positive supercoiling in chromosomes [RNA-Seq 2]
GSE164587	CRAC of Nab3 in yeast cells accumulating a circular RNA containing Nab3 binding sites (the decoy) or an empty control
GSE165163	TrAEL-seq for CUP1 locus
GSE165594	Cis-regulatory variation affects gene expression dynamics
GSE166918	Reprogramming mRNA expression in response to defect in RNA polymerase III assembly in the yeast Saccharomyces cerevisiae
GSE166983	Spt4 promotes Pol I processivity and transcription elongation
GSE168290	NOT proteins in co-translation decay
GSE168674	No evidence for whole-chromosome dosage compensation or global transcriptomic expression differences in spontaneously-aneuploid mutation accumulation lines of Saccharomyces cerevisiae
GSE168699	Time series data of chromatin and transcription throughout the cell cycle
GSE169748	Connection of core and and tail Mediator modules restrains transcription from TFIID-dependent promoters
GSE171329	Decoupling of degradation from deadenylation reshapes poly(A) tail length in yeast meiosis
GSE171953	The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
GSE173065	Post-replicative nick translation occurs on the lagging strand during prolonged depletion of DNA ligase I in Saccharomyces cerevisiae
GSE173534	ChIPseq experiments for chromatin modification in S.cerevisiae upon truncations of CTR9
GSE174698	High-resolution mapping of transcribing RNAPIII by CRAC upon mutation or depletion of Sen1 [Experiment 1]
GSE174699	High-resolution mapping of transcribing RNAPIII by CRAC upon depletion of Nrd1 [Experiment 2]
GSE174700	High-resolution mapping of transcribing RNAPIII by CRAC upon mutation of Sen1 in the G1 phase of the cell cycle [Experiment 3]
GSE174738	Intrinsic and extrinsic mechanisms cooperate to ensure efficient termination of RNAPIII transcription.
GSE175553	BMH-21 inhibits RNA polymerase I transcription cycle and rDNA occupancy
GSE178159	Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes [ChIP-seq]
GSE178160	Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes [RNA-seq]
GSE178161	Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes
GSE178832	Multiplexed‌ ‌profiling‌ ‌facilitates‌ ‌robust‌ ‌m6A‌ ‌ quantification‌ ‌at‌ ‌site,‌ ‌gene‌ ‌and‌ ‌sample‌ ‌resolution
GSE179366	A nitrogen source-regulated microprotein confers an alternative mechanism of G1/S transcriptional activation in budding yeast
GSE179430	WGD paralog evolution
GSE179468	Functional characterization of the transcription programs underlying phase transition in the BSL3 pathogen Coccidioides immitis
GSE179539	Polη-ChIP-seq
GSE179765	Connection of core and and tail Mediator modules restrains transcription from TFIID-dependent promoters [ChEC-seq Med16-AID]
GSE179791	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress [tDNA]
GSE180114	The specific DNA sequence recognized by the yeast transcription factor Gcn4 is sufficient to predict high-affinity binding on a genome-wide scale
GSE180165	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress [ChIP-seq]
GSE180167	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress
GSE182203	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions [ChIP-seq]
GSE182792	Ssl2/TFIIH Function in Transcription Start Site Scanning by RNA Polymerase II in Saccharomyces cerevisiae
GSE183045	Using DMS-MaPseq to dissect structural differences of ribosomal RNA in different SSU Processome intermediates
GSE183481	Depletion or cleavage of cohesin during anaphase differentially affects chromatin structure and segregation
GSE184188	H3K4me3 recognition by the COMPASS complex guides de novo histone methylation to restore the symmetric distribution of H3K4me3 following DNA replication
GSE184473	ChIP-seq facilitates the quantitative analysis of Rvb proteins' enrichment on the genome during stress
GSE185016	Chromosome conformation for wild type and clb5 clb6 strains arrested in meiotic prophase I
GSE185017	Chromosome conformation for wild type, eco1-aa, wpl1Δ and eco1-aa wpl1Δ strains arrested in meiotic prophase I
GSE185021	Eco1-dependent cohesin acetylation anchors chromatin loops and cohesion to define functional meiotic chromosome domains
GSE185290	Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels
GSE185458	RNA Sequencing and Ribosome profiling of TMA46, STM1 and YGR054W knockout yeast strains
GSE186795	Ribosome-bound Upf1 forms distinct 80S complexes and conducts mRNA surveillance
GSE189404	Distinct ribosome states trigger diverse mRNA quality control pathways
GSE190495	Drug resistance profiling of thousands of Src kinase mutants uncovers a regulatory network that couples autoinhibition to catalytic domain dynamics
GSE190737	Nucleosome position mapping by micrococcal nuclease analysis of S. cerevisiae anchor-away Sth1, Swi2 and/of TBP cells in raffinose and galactose-rich media in rapamycin or DMSO
GSE191091	A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast
GSE191212	Engineering class-B vitamin biosynthesis in Saccharomyces cerevisiae
GSE192701	A role for the Saccharomyces cerevisiae Rtt109 histone acetyltransferase in R-loop homeostasis and associated genome instability
GSE193912	Not1 and Not4 inversely determine mRNA solubility that sets the dynamics of co-translational events
GSE195936	CRAC of yeast RNA polymerase II and RNases H in asynchronous, G1-arrested, and S-phase cells.
GSE196061	Chromosome conformation for wild type and clb5 clb6 strains arrested before meiotic S phase
GSE196069	Systematic mutagenesis identifies p52/Tfb2 residues required for XPB/Ssl2 function within TFIIH and genetic interactions with TFB6
GSE196132	Chromosome conformation for wild type, eco1-aa, cdc6-mn and eco1-aa cdc6-mn strains arrested in meiotic prophase I
GSE196146	Impairment of RNA polymerase I elongation rate induces defects in ribosomal RNA processing and ribosome biogenesis
GSE196398	High-resolution mapping of transcribing Pol III by CRAC in the WT and C128 mutants
GSE196690	Global SLAM-Seq for accurate mRNA decay determination and identification of NMD targets
GSE197022	Meiotic DNA breaks activate a streamlined response that largely avoids protein level changes
GSE197651	Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR
GSE197917	The Swi-Snf chromatin remodeling complex mediates gene activation through metabolic control [ChIP-seq]
GSE197918	The Swi-Snf chromatin remodeling complex mediates gene activation through metabolic control [RNA-seq I]
GSE197919	The Swi-Snf chromatin remodeling complex mediates gene activation through metabolic control.
GSE198148	Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III [Micro-C seq]
GSE198161	A nucleolar condensin-recruiting complex that regulates yeast chromosome III structure [ChIP-Seq]
GSE198162	A nucleolar condensin-recruiting complex that regulates yeast chromosome III structure
GSE200088	The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts [CRAC]
GSE200089	The S. cerevisiae m6A reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts.
GSE200950	5PSeq supporting study Probing 3’UTRs as modular regulators of gene expression
GSE201036	Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation
GSE201193	ChIP Seq Analysis of SCC2 in the Presence or Absence of MED14 in Saccharomyces cerevisiae
GSE201194	RNA-Seq and ChIP-seq analysis of SCC2 in Saccharomyces cerevisiae
GSE201632	The conserved histone chaperone Spt6 facilitates DNA replication and mediates genome instability [BrdU-IP-seq]
GSE201634	The conserved histone chaperone Spt6 facilitates DNA replication and mediates genome instability
GSE202160	MRT-ModSeq - Rapid detection of RNA modifications with MarathonRT
GSE202590	Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae
GSE202803	Duplicated ribosomal protein paralogs promote alternative translation and drug resistance
GSE203465	The PCNA-Pol d complex couples lagging strand DNA synthesis to parental histone transfer
GSE207001	De novo inference of thermodynamic binding energies using deep learning models of in vivo transcription factor binding
GSE207369	Involvement of the SAGA and TFIID coactivator complexes in transcriptional dysregulation caused by separation of core and tail Mediator modules (ChEC-Seq)
GSE207370	Involvement of the SAGA and TFIID coactivator complexes in transcriptional dysregulation caused by separation of core and tail Mediator modules (nsRNA-Seq)
GSE207371	Involvement of the SAGA and TFIID coactivator complexes in transcriptional dysregulation caused by separation of core and tail Mediator modules
GSE207427	Analysing the impact of extrachromosomal rDNA circles (ERCs) on the ageing yeast transcriptome [RNA]
GSE207428	Analysing the impact of extrachromosomal rDNA circles (ERCs) on the ageing yeast transcriptome [genome]
GSE207429	Analysing the impact of extrachromosomal rDNA circles (ERCs) on the ageing yeast transcriptome
GSE207503	Ageing transcriptomes of selected mutants on different carbon sources
GSE208589	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions [mRNA-seq]
GSE208590	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions
GSE210558	Nab6 and Mrn1 regulate the expression of cell wall mRNAs in budding yeast
GSE210928	Effect of Tup1, Xbp1, Isw2, and Sds3 on H3K23ac in stationary phase.
GSE210929	Effect of Tup1 and Isw2 on nucleosome positions in stationary phase.
GSE210930	Effect of Tup1, Xbp1, Isw2, and Sds3 on transcription in diauxic shift and stationary phase.
GSE210932	Tup1 binding during log phase, diauxic shift, and stationary phase.
GSE210933	Xbp1 binding during log phase and stationary phase.
GSE210934	Tup1, Xbp1, Isw2, and Sds3
GSE211649	Absence of the eisosome causes general transcriptome remodeling of the yeast cell
GSE212193	Transcriptome (RNA-Seq) of PPN2-overexpressing S. cerevisiae in normal and alkali conditions
GSE212653	An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters [RNA-Seq]
GSE212654	An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters [ChIP-Exo]
GSE212655	An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters
GSE213464	The Swi-Snf chromatin remodeling complex mediates gene activation through metabolic control [RNA-Seq II]
GSE213942	CEG1 DEPLETION REVEALS MECHANISMS GOVERNING DEGRADATION OF NON-CAPPED RNAs
GSE214902	Yap1-mediated Flr1 expression reveals crosstalk between oxidative stress signaling and caffeine resistance in Saccharomyces cerevisiae
GSE215896	RNase H2 degrades toxic RNA:DNA hybrids behind stalled forks to promote replication restart
GSE216448	High level and nature of transcriptional noise in yeast cells [5'-Seq]
GSE216450	High level and nature of transcriptional noise in yeast cells
GSE216460	Testing the usage of divalent metal cations and nucleases during NET-seq for Pol I
GSE216831	Decapping factor Dcp2 controls mRNA abundance and translation to adjust metabolism and filamentation to nutrient availability
GSE217150	Genome-wide maps of GFPyTBP (ChIP-seq) in yeast kap114-KO SC1005 strains
GSE217963	CRAC of yeast RNA polymerase II in Topoisomerase 1 and 2 depleted cells
GSE218023	Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6
GSE218152	Effects of urolithin B treatment on gene expression of IAPP-expressing yeast cells
GSE218190	Molecular determinants of Hsp90 recognition of Src kinase revealed by deep mutational scanning
GSE218924	DNA-directed termination of RNA Polymerase II transcription I
GSE218927	DNA-directed termination of RNA Polymerase II transcription II
GSE218928	DNA-directed termination of RNA Polymerase II transcription
GSE221655	Perturbation of gene expression for increased protein secretion in yeast.
GSE221913	The conserved histone chaperone Spt6 facilitates DNA replication and mediates genome stability [MCM ChIPseq]
GSE222029	Synthetic reversed sequence reveals default chromatin states [Yeast_ATAC-seq]
GSE222033	Synthetic reversed sequence reveals default chromatin states [Yeast_RNA-seq]
GSE222034	Synthetic reversed sequence reveals default chromatin states [Yeast_CAGE-seq]
GSE222036	Synthetic reversed sequence reveals default chromatin states [Yeast_ChIP-seq]
GSE222040	Synthetic reversed sequence reveals default chromatin states
GSE224074	DNA double-strand breaks regulate the cleavage-independent release of Rec8-cohesin during yeast meiosis
GSE224774	mRNA decapping activators Pat1 and Dhh1 regulate transcript abundance and translation to tune cellular responses to nutrient availability
GSE224835	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles [m6A-Seq]
GSE224836	The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles
GSE225129	Chromatin binding by HORMAD proteins regulates meiotic recombination initiation
GSE225324	A R-loop sensing pathway mediates the relocation of transcribed genes to nuclear pore complexes
GSE226744	The small iridoid compound genipin prevents alpha-synuclein aggregation and toxicity by affecting endocytosis, metabolism and lipid storage
GSE226854	RNA content of yeast nuclear mRNPs
GSE226972	RNA-seq of Yra1 associated mRNAs
GSE226974	Gene expression analysis of yeast grown at 25, 30 and 37°C
GSE227381	Effect of the lysphosphatidylcholine analogue edelfosine on gene expression in Saccharomyces cerevisiae
GSE227470	A regulator of RNA Polymerase III at tRNA genes revealed by locus-specific proteome decoding
GSE228556	Genome-wide ChIP-exo profiling of Fpt1 in glucose
GSE228788	Activity of the pleiotropic drug resistance transcription factors Pdr1p and Pdr3p is modulated by binding site flanking sequences
GSE228828	The DEAD-box RNA helicase Ded1 is a translation-elongation factor
GSE228861	Transcription and FACT facilitate the restoration of replication-coupled chromatin assembly defects
GSE229691	Direct and indirect consequences of PAB1 deletion in the regulation of translation initiation, translation termination, and mRNA decay [RNA-seq]
GSE229692	Direct and indirect consequences of PAB1 deletion in the regulation of translation initiation, translation termination, and mRNA decay [Ribo-seq]
GSE229797	The yeast genome is globally accessible in living cells [Illumina]
GSE230309	The yeast genome is globally accessible in living cells
GSE230761	The transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis and cytoplasmic decay
GSE232684	Investigation of Rap1 binding occupancy in global H3-depletion condition [RNA-seq]
GSE232685	Investigation of Rap1 binding occupancy in global H3-depletion condition
GSE232731	Determining the effect of RPA49 on RNA polymerase I occupancy in vivo
GSE233549	Dbf4-dependent kinase promotes cell-cycle controlled resection of DNA double strand breaks and repair by homologous recombination
GSE233704	Effect of the antifungal protein PeAfpA in the expression profile of Saccharomyces cerevisiae BY4741 strain.
GSE234215	High Throughput Plant Activation Domain Identification and Mapping
GSE234406	Elongation rate of RNA polymerase II affects pausing patterns across the 3’ UTR
GSE234869	Analyzing the impact of extrachromosomal rDNA circles (ERCs) on the ageing yeast transcriptome
GSE235000	Genome-scale chromatin interaction dynamic measurements for key components of the RNA Pol II general transcription machinery [ChIP-seq]
GSE235002	Genome-scale chromatin interaction dynamic measurements for key components of the RNA Pol II general transcription machinery
GSE235359	Identification of factors influencing the pattern of polyadenylation site use in Saccharomyces cerevisiae
GSE235881	Genome-wide analysis of replication fork locations in hydroxyurea-treated Saccharomyces cerevisiae by TrAEL-seq
GSE236000	The Swi-Snf chromatin remodeling complex mediates gene activation through metabolic control [ChIP-seq II]
GSE236173	Minimal requirements for the epigenetic inheritance of engineered silent chromatin domains
GSE236944	Surprising mechanisms and regulatory roles of yeast transcription factors [ChEC-seq]
GSE236947	Surprising mechanisms and regulatory roles of yeast transcription factors [RNA-seq]
GSE236948	Surprising mechanisms and regulatory roles of yeast transcription factors
GSE239965	The Fork Protection Complex protects long replicons from DNA damage at the cost of genome instability induced by DNA topological stress [ChIP-seq]
GSE239966	The Fork Protection Complex protects long replicons from DNA damage at the cost of genome instability induced by DNA topological stress [TrAEL-seq]
GSE239967	The Fork Protection Complex generates DNA topological stress induced DNA damage while ensuring full and faithful genome duplication
GSE240399	Ribonucleotides embedded in genomic DNA of Aicardi-Goutières syndrome (AGS)-orthologous mutants of Saccharomyces cerevisiae using ribose-seq protocol
GSE240513	Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle
GSE242509	RNA sequence (RNA-seq) profiling of synthesized chromosome SynI in Saccharomyces cerevisiae
GSE242739	Multiomics of GCN4-dependent replicative lifespan extension models reveals Gcn4 as a regulator of protein turnover in yeast
GSE244061	RNA sequence (RNA-seq) profiling of Syn6.5 consolidation strain
GSE244513	RNA sequence (RNA-seq) profiling of SynVIII strain
GSE244611	RNA sequence (RNA-seq) profiling of SynXI strain
GSE244852	Hi-C profiling of SynVIII strain
GSE246153	Size fractionated NET-Seq reveals a conserved architecture around yeast genes
GSE246322	The genetic architecture of protein stability
GSE246422	Orphan quality control by an SCF ubiquitin ligase directed to pervasive C-degrons
GSE247583	Classifying pathogenic variants in amyloid beta using intramolecular genetic interaction profiling
GSE247981	Investigating the role of Hmo1 in transcription by Pol I in yeast.
GSE249930	Profiling The Compendium Of Changes In Saccharomyces cerevisiae Due To Mutations That Alter Availability Of The Main Methyl Donor S-Adenosylmethionine
GSE252043	Illumina sequencing of CRAC data obtained with Ylr419w
GSE252468	Synthetic reversed sequences reveal default genomic states [Yeast_ATACseq]
GSE252471	Synthetic reversed sequences reveal default genomic states [Yeast_CAGEseq]
GSE252472	Synthetic reversed sequences reveal default genomic states [Yeast_ChIPseq]
GSE252473	Synthetic reversed sequences reveal default genomic states [Yeast_RNAseq]
GSE252482	Synthetic reversed sequences reveal default genomic states
GSE254493	Evaluation and optimization of sequence-based gene regulatory deep learning models
GSE262389	The protein moonlighting dominates the phenotypic divergence of the Sef1 transcriptional regulatory networks in yeasts
GSE262747	Chromatin regulates alternative polyadenylation via the RNA polymerase II elongation rate
GSE263250	Pre-clinical proof of principle for orally delivered Th17 antagonist miniproteins
GSE263367	Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal mechanisms of chromatin-mediated transcriptional regulation
GSE265816	A complete map of affinity and specificity encoding for a partially fuzzy protein interaction
GSE265942	Site saturation mutagenesis of 500 human protein domains
GSE266299	Genetics, energetics and allostery during a billion years of hydrophobic protein core evolution
GSE268261	Interpretably deep learning amyloid nucleation by massive experimental quantification of random sequences
GSE269461	Energetic portrait of the amyloid beta transition state
GSE273028	Histone acetylation readers Bdf1 and Yaf9 guide targeting of SWR1 remodeler to +1 nucleosome
GSE275429	Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler