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| Status |
Public on Jan 16, 2024 |
| Title |
Circadian RNA-seq dataset in nhr-23 knockldown strain. |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
C. elegans were cultivated under temperature cycles for circadian entraiment. Then, we depleted NHR-23 using auxin-induced degron system, and sampled worms under constant(CC) condition every 2 h.
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| Overall design |
Circadian transcriptome anaysis of nhr-23 knockdown and control condition, at 12 h time points with 2 replicates.
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| Contributor(s) |
Hiroki S |
| Citation(s) |
38418700 |
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| Submission date |
Jun 01, 2023 |
| Last update date |
Mar 11, 2024 |
| Contact name |
Shingo Hiroki |
| Organization name |
Tokyo Metropolitan Instituite of Medical Sciences
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| Lab |
Circadian clock lab
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| Street address |
2-1-6 Kamikitazawa
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| City |
Setagaya-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
156-8506 |
| Country |
Japan |
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| Platforms (1) |
| GPL30091 |
DNBSEQ-G400 (Caenorhabditis elegans) |
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| Samples (48)
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| GSM7438638 |
Mock, CT3_rep2 |
| GSM7438639 |
Mock, CT5_rep1 |
| GSM7438640 |
Mock, CT5_rep2 |
| GSM7438641 |
Mock, CT7_rep1 |
| GSM7438642 |
Mock, CT7_rep2 |
| GSM7438643 |
Mock, CT9_rep1 |
| GSM7438644 |
Mock, CT9_rep2 |
| GSM7438645 |
Mock, CT11_rep1 |
| GSM7438646 |
Mock, CT11_rep2 |
| GSM7438647 |
Mock, CT13_rep1 |
| GSM7438648 |
Mock, CT13_rep2 |
| GSM7438649 |
Mock, CT15_rep1 |
| GSM7438650 |
Mock, CT15_rep2 |
| GSM7438651 |
Mock, CT17_rep1 |
| GSM7438652 |
Mock, CT17_rep2 |
| GSM7438653 |
Mock, CT19_rep1 |
| GSM7438654 |
Mock, CT19_rep2 |
| GSM7438655 |
Mock, CT21_rep1 |
| GSM7438656 |
Mock, CT21_rep2 |
| GSM7438657 |
Mock, CT23_rep1 |
| GSM7438658 |
Mock, CT23_rep2 |
| GSM7438659 |
K-NAA, CT1_rep1 |
| GSM7438660 |
K-NAA, CT1_rep2 |
| GSM7438661 |
K-NAA, CT3_rep1 |
| GSM7438662 |
K-NAA, CT3_rep2 |
| GSM7438663 |
K-NAA, CT5_rep1 |
| GSM7438664 |
K-NAA, CT5_rep2 |
| GSM7438665 |
K-NAA, CT7_rep1 |
| GSM7438666 |
K-NAA, CT7_rep2 |
| GSM7438667 |
K-NAA, CT9_rep1 |
| GSM7438668 |
K-NAA, CT9_rep2 |
| GSM7438669 |
K-NAA, CT11_rep1 |
| GSM7438670 |
K-NAA, CT11_rep2 |
| GSM7438671 |
K-NAA, CT13_rep1 |
| GSM7438672 |
K-NAA, CT13_rep2 |
| GSM7438673 |
K-NAA, CT15_rep1 |
| GSM7438674 |
K-NAA, CT15_rep2 |
| GSM7438675 |
K-NAA, CT17_rep1 |
| GSM7438676 |
K-NAA, CT17_rep2 |
| GSM7438677 |
K-NAA, CT19_rep1 |
| GSM7438678 |
K-NAA, CT19_rep2 |
| GSM7438679 |
K-NAA, CT21_rep1 |
| GSM7438680 |
K-NAA, CT21_rep2 |
| GSM7438681 |
K-NAA, CT23_rep1 |
| GSM7438682 |
K-NAA, CT23_rep2 |
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| Relations |
| BioProject |
PRJNA978523 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233891_RNA-seq_Result.xlsx |
12.4 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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