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| Status |
Public on May 24, 2024 |
| Title |
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms. |
| Organism |
Drosophila melanogaster |
| Experiment type |
Other
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://doi.org/10.1016/j.molcel.2024.05.002
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| Citation(s) |
38795706 |
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| Submission date |
Jun 06, 2023 |
| Last update date |
Aug 23, 2024 |
| Contact name |
Daniel McKay |
| Organization name |
University of North Carolina at Chapel Hill
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| Street address |
250 Bell Tower Drive
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| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599 |
| Country |
USA |
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| Platforms (2) |
| GPL21306 |
Illumina HiSeq 4000 (Drosophila melanogaster) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (72)
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| GSM7426677 |
Wing disc, HP1a-chromo, HiC, rep2 |
| GSM7426678 |
Wing disc, HWT, HiC, rep1 |
| GSM7426679 |
Wing disc, HWT, HiC, rep2 |
| GSM7426680 |
Wing disc, K9R, HiC, rep1 |
| GSM7426681 |
Wing disc, K9R, HiC, rep2 |
| GSM7461477 |
Wing disc, HP1a-control, RNAseq, rep1 |
| GSM7461478 |
Wing disc, HP1a-control, RNAseq, rep2 |
| GSM7461479 |
Wing disc, HP1a-control, RNAseq, rep3 |
| GSM7461480 |
Wing disc, HP1a-chromo, RNAseq, rep1 |
| GSM7461481 |
Wing disc, HP1a-chromo, RNAseq, rep2 |
| GSM7461482 |
Wing disc, HP1a-chromo, RNAseq, rep3 |
| GSM7461483 |
Wing disc, HP1a-chromo, RNAseq, rep4 |
| GSM7589758 |
Wing disc, HP1a-control, H3K9me3, rep1 |
| GSM7589759 |
Wing disc, HP1a-control, H3K9me3, rep2 |
| GSM7589760 |
Wing disc, HP1a-control, H3K9me3, rep3 |
| GSM7589761 |
Wing disc, HP1a-chromo, H3K9me3, rep1 |
| GSM7589762 |
Wing disc, HP1a-chromo, H3K9me3, rep2 |
| GSM7589763 |
Wing disc, HP1a-chromo, H3K9me3, rep3 |
| GSM7589764 |
Wing disc, HWT, H3K9me3, rep1 |
| GSM7589766 |
Wing disc, HWT, H3K9me3, rep2 |
| GSM7589767 |
Wing disc, HWT, H3K9me3, rep3 |
| GSM7589768 |
Wing disc, K9R, H3K9me3, rep1 |
| GSM7589769 |
Wing disc, K9R, H3K9me3, rep2 |
| GSM7589770 |
Wing disc, K9R, H3K9me3, rep3 |
| GSM7589771 |
Wing disc, yw, H3K9me3, rep1 |
| GSM7589772 |
Wing disc, yw, H3K9me3, rep2 |
| GSM7589773 |
Wing disc, yw, H3K9me3, rep3 |
| GSM7589774 |
Wing disc, HWT, H3K27me3, rep1 |
| GSM7589775 |
Wing disc, HWT, H3K27me3, rep2 |
| GSM7589776 |
Wing disc, HWT, H3K27me3, rep3 |
| GSM7589777 |
Wing disc, K9R, H3K27me3, rep1 |
| GSM7589778 |
Wing disc, K9R, H3K27me3, rep2 |
| GSM7589779 |
Wing disc, K9R, H3K27me3, rep3 |
| GSM7589780 |
Wing disc, GFP-HP1a/GFP-HP1a, GFP, rep1, sup |
| GSM7589781 |
Wing disc, GFP-HP1a/GFP-HP1a, GFP, rep1, pel |
| GSM7589782 |
Wing disc, GFP-HP1a/GFP-HP1a, GFP, rep2, sup |
| GSM7589783 |
Wing disc, GFP-HP1a/GFP-HP1a, GFP, rep2, pel |
| GSM7589784 |
Wing disc, GFP-HP1a/+, GFP, rep1, sup |
| GSM7589786 |
Wing disc, GFP-HP1a/+, GFP, rep1, pel |
| GSM7589787 |
Wing disc, yw, GFP, rep1, pel |
| GSM7589788 |
Wing disc, yw, GFP, rep2, pel |
| GSM7589789 |
Wing disc, HP1a-control, HP1a, rep1 |
| GSM7589790 |
Wing disc, HP1a-control, HP1a, rep2 |
| GSM7589791 |
Wing disc, HP1a-control, HP1a, rep3 |
| GSM7589792 |
Wing disc, HP1a-control, HP1a, rep4 |
| GSM7589793 |
Wing disc, HP1a-control, HP1a, rep5 |
| GSM7589794 |
Wing disc, HP1a-chromo, HP1a, rep1 |
| GSM7589795 |
Wing disc, HP1a-chromo, HP1a, rep2 |
| GSM7589796 |
Wing disc, HP1a-chromo, HP1a, rep3 |
| GSM7589797 |
Wing disc, HWT, HP1a, rep1 |
| GSM7589798 |
Wing disc, HWT, HP1a, rep2 |
| GSM7589799 |
Wing disc, HWT, HP1a, rep3 |
| GSM7589800 |
Wing disc, HWT, HP1a, rep4 |
| GSM7589801 |
Wing disc, HWT, HP1a, rep5 |
| GSM7589803 |
Wing disc, K9R, HP1a, rep1 |
| GSM7589804 |
Wing disc, K9R, HP1a, rep2 |
| GSM7589805 |
Wing disc, K9R, HP1a, rep3 |
| GSM7589809 |
Wing disc, HP1a-control, FAIREseq, rep1 |
| GSM7589811 |
Wing disc, HP1a-control, FAIREseq, rep2 |
| GSM7589812 |
Wing disc, HP1a-control, FAIREseq, rep3 |
| GSM7589813 |
Wing disc, HP1a-chromo, FAIREseq, rep1 |
| GSM7589814 |
Wing disc, HP1a-chromo, FAIREseq, rep2 |
| GSM7589815 |
Wing disc, HP1a-chromo, FAIREseq, rep3 |
| GSM8288657 |
Wing disc, CrGFP-HP1a, GFP, rep1, sup |
| GSM8288658 |
Wing disc, CrGFP-HP1a, GFP, rep2, sup |
| GSM8288659 |
Wing disc, CrGFP-HP1a, GFP, rep3, sup |
| GSM8288660 |
Wing disc, CrGFP-HP1chromo, GFP, rep1, sup |
| GSM8288661 |
Wing disc, CrGFP-HP1chromo, GFP, rep2, sup |
| GSM8288662 |
Wing disc, CrGFP-HP1chromo, GFP, rep3, sup |
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| This SuperSeries is composed of the following SubSeries:
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| GSE233384 |
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms [Hi-C] |
| GSE234276 |
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms [RNA-seq] |
| GSE236964 |
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms[CUT&RUN] |
| GSE236965 |
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms[FAIRE-seq] |
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| Relations |
| BioProject |
PRJNA980675 |
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