|
| Status |
Public on Sep 05, 2023 |
| Title |
Detection of plant microRNAs in edible-plant based products |
| Organisms |
Citrus sinensis; Spinacia oleracea; Malus domestica; Prunus dulcis; Solanum lycopersicum; Olea europaea; Pyrus communis; Juglans regia |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Plant-based diets could be a key source of microRNAs in animals. Plant microRNAs are cross-kingdom gene expression regulators that could modulate mammalian gene expression, influencing their physiology. Therefore, it is important to identify the microRNA expression profile of plant foods in order to identify potential target genes and biological functions in the mammalian host. Next-generation sequencing was applied to identify microRNAs in RNA samples derived from nuts (walnut and almond), vegetables (spinach) and fruits (orange, apple, olive, pear, and tomato). Our data revealed that edible plant contain a large number and diverse type of microRNAs.
|
| |
|
| Overall design |
To identify microRNAs from edible plants, next-generation sequencing was performed with total RNA isolated from 0.1 g of fruits and vegetables (orange, apple, olive, pear, tomato, spinach) and 0.5 g of nuts (walnut and almond).
|
| |
|
| Contributor(s) |
Díez-Sainz E, Lorente-Cebrián S, Aranaz P, Riezu-Boj JI, Milagro FI |
| Citation(s) |
38099184 |
| |
| Submission date |
Jun 13, 2023 |
| Last update date |
Dec 22, 2023 |
| Contact name |
Fermín Ignacio Milagro Yoldi |
| E-mail(s) |
fmilagro@unav.es
|
| Organization name |
University of Navarra
|
| Department |
Department of Nutrition, Food Science and Physiology/Center for Nutrition Research
|
| Street address |
C/Irunlarrea,1
|
| City |
Pamplona |
| State/province |
Navarra |
| ZIP/Postal code |
31008 |
| Country |
Spain |
| |
|
| Platforms (8)
|
| GPL19694 |
Illumina HiSeq 2500 (Solanum lycopersicum) |
| GPL20848 |
Illumina HiSeq 2500 (Malus domestica) |
| GPL21082 |
Illumina HiSeq 2500 (Citrus sinensis) |
| GPL24090 |
Illumina HiSeq 2500 (Spinacia oleracea) |
| GPL24105 |
Illumina HiSeq 2500 (Olea europaea) |
| GPL27530 |
Illumina HiSeq 2500 (Prunus dulcis) |
| GPL29438 |
Illumina HiSeq 2500 (Juglans regia) |
| GPL33485 |
Illumina HiSeq 2500 (Pyrus communis) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA983220 |
Less...
More...