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Series GSE235487 Query DataSets for GSE235487
Status Public on Jun 22, 2023
Title Human HFF cells large rearrangements detection after CRISPR-Cas9 nuclease (Fig. 4C)
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Genome variation profiling by SNP array
Summary ADRA2A or CPXM2 or TRUB1 or VCL or PLEKHA1 gene editing by CRISPR-Cas9 nuclease in heterozygous HFF for UROS inactivation. Fluorescent positive cell sorting for UROS and large rearrangements confirmation in chromosome 10q.
 
Overall design Five-condition experiment,edited HFF vs control clone 6 WT HFF. Fluorescent positive cell bulk after ADRA2A or CPXM2 or TRUB1 or VCL or PLEKHA1 gene editing.
 
Contributor(s) Boutin J, Pennamen P
Citation(s) 37429857
Submission date Jun 21, 2023
Last update date Sep 12, 2023
Contact name Julian Boutin
E-mail(s) julian.boutin@u-bordeaux.fr
Organization name INSERM U1312 BRIC
Lab BioGO team 8
Street address 146 rue Leo Saignat
City Bordeaux
State/province Nouvelle Aquitaine
ZIP/Postal code 33000
Country France
 
Platforms (1)
GPL17052 Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Probe Name version)
Samples (5)
GSM7503657 HFF ADRA2A transfected CGH bulk
GSM7503658 HFF CPXM2 transfected CGH bulk
GSM7503659 HFF TRUB1 transfected CGH bulk
Relations
BioProject PRJNA986147

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235487_4c.txt.gz 113.0 Kb (ftp)(http) TXT
GSE235487_RAW.tar 32.2 Mb (http)(custom) TAR (of TXT)
Processed data are available on Series record

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