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Series GSE240012 Query DataSets for GSE240012
Status Public on Dec 31, 2023
Title A comparison between GalT-/-;hCD39;hCD55 and GalT-/-;hCD39;hCD46;hCD55;TBM pig kidney transplanted in non-human primates
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary Due to shortage of donor kidney, genetically modified kidney xenograft from pigs is considered. To select the optimal gene modification for xenotransplantation, knockout of carbohydrate genes or knockin of protective proteins have been applied. In this study, we utilized GalT- /-;hCD39;hCD55 and GalT-/-;hCD39;hCD46;hCD55;thrombomodulin (TBM) pigs for transplantation in non-human primates. NHPs survived for 4 weeks after kidney transplantation (4 WAT) from GalT-/-;hCD39;hCD55 pig and 6 WAT from GalT- /-;hCD39;hCD46;hCD55;TBM pig. However, mRNA sequencing and immunohistochemistry analysis revealed that 6 WAT kidney showed the severe apoptosis, inflammation, loss of renal function, and renal fibrosis than 4 WAT kidney. These results suggest that additional knockin of anti-complement (hCD26) and anti-coagulation (TBM) is not sufficient to inhibit the renal damage.
 
Overall design To select genotype that effectively alleviates immune rejection reponse, we performed comparative transcriptome profiling using mRNA seq data obtained from kidneys of GalT-/-;hCD39;hCD55 and GalT-/-;hCD39;hCD46;hCD55;thrombomodulin (TBM) pigs.
 
Contributor(s) Suh H, Lee J, Yun I, Kim W, Choi K, Hwang J
Citation(s) 38229498
Submission date Aug 03, 2023
Last update date Jan 29, 2024
Contact name Hanna Suh
E-mail(s) hanna.suh@kitox.re.kr
Organization name Korea institute of toxicology
Street address 30, Baekhak 1-gil, Jeongeup-si, Jeollabuk-do, Republic of Korea
City Jeongeup-si
ZIP/Postal code 56212
Country South Korea
 
Platforms (1)
GPL20983 Illumina NextSeq 500 (Sus scrofa)
Samples (4)
GSM7679779 Untransplanted kidney of GalT-/-;hCD39;hCD55 pig
GSM7679780 4 weeks after transplantation kidney of GalT-/-;hCD39;hCD55 pig
GSM7679781 Untransplanted GalT-/-;hCD39;hCD46;hCD55;TBM pig
Relations
BioProject PRJNA1001921

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Supplementary file Size Download File type/resource
GSE240012_RAW.tar 550.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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